Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Piromyces_20finnis_20[genbank_20GCA_5F002104945.1_202017-04-20] 232 sequences; 56,455,805 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq158 185 2e-41 seq68 136 9e-27 seq172 95.1 3e-14 seq194 91.5 3e-13 seq211 89.7 1e-12 >seq158 Length=610027 Score = 185 bits (204), Expect = 2e-41 Identities = 368/534 (69%), Gaps = 12/534 (2%) Strand=Plus/Minus Query 279806 GAATTTATTGATAAAGAACTGATCCATTTTTCTAATTATGATGTTCATCGTTCTATTCCT 279865 ||||||||| |||||||| | || || || |||| |||||| |||||||||||| Sbjct 600775 GAATTTATTAATAAAGAATTAATTCAATTCTCTATGGCAGATGTTATTCGTTCTATTCCA 600716 Query 279866 CATTTAATGGATGGTTTGAAACCTTCACAGCGTAAGATTATATTCAGTTGTTTCAAAAGA 279925 ||| | |||||||| |||||| || | || ||||| | |||||||||||||||| Sbjct 600715 TCCTTAGTTGATGGTTTTAAACCTGGTCAAAGAAAAATTATGTACAGTTGTTTCAAAAGA 600656 Query 279926 AAATTGGTAAAGGAAATTCGTGTTGCTCAGTTAGCAGGTTATGTTTCAGAACATGCAGGT 279985 || || || |||||| ||||| || | | |||||| || | |||||| ||| Sbjct 600655 AATTTAACCAATGAAATTAAGGTTGCCCAACTTACTGGTTATATTGCTGAACATACAGCC 600596 Query 279986 TATCATCACGGTGAAGCGTCTCTTCAAGGTGCTATTGTAGGTCTTGCCCAAGATTTTATG 280045 || ||||| |||||| |||| ||||||||| | | || ||||||||| | Sbjct 600595 TACCATCATGGTGAACAAAGTCTTTCTCTTGCTATTGTTAATTTAGCTCAAGATTTTGTT 600536 Query 280046 GCTTCAAACAA-CTTAAATCTGCTTTCACCAAATGGTCAATTTGGTTCTCGTATTCACAA 280104 | | || || || || || | |||||||||||||| ||| | ||| | || Sbjct 600535 GGTAGTAATAATGTTCCAT-TGTTAGTTCCAAATGGTCAATTCGGTACACGTTTACAAGG 600477 Query 280105 TGGAAAAGATCATGGTAGTGCTCGTTACATACATACATGTCTTTCAGATA---TTAC-AA 280160 ||| || ||| || ||||||||||| ||| | || || | || || || | | Sbjct 600476 TGGTAAGGATGCTGCTAGTGCTCGTT--ATATTTTCA-CTCAATTAGCTAAAGTTGCTAG 600420 Query 280161 ACAAGTTATTTATCAATTCTGATAATGCT-TCATTAGAGTGGCTAGAGGATGATGGTCTT 280219 | | || || | || || ||| || | ||||| || | || | |||||||||| Sbjct 600419 ATTAATT-TTCAAGAAATCAGATGATAATATCATT-GAATATTTAAATGATGATGGTCAA 600362 Query 280220 GCTATTGAACCAACATATTATGCTCCAATTATCCCTATGATTCTTGTTAATGGTGCTCAA 280279 |||||||||| || ||| ||| ||| | |||||| ||||| |||||||||| || Sbjct 600361 ATGATTGAACCAAAATGGTATATTCCCATTTTACCTATGGTTCTTATTAATGGTGCAGAA 600302 Query 280280 GGAATTGGAACAGGTTATTCTACATCTATCCCAATGTACAATCCAATTGATATT 280333 || ||||| ||||||||| ||| ||| |||| | |||||||| ||| || Sbjct 600301 GGTATTGGTACAGGTTATAGTACCAGTATTCCAAATTTCAATCCAAGAGATGTT 600248 Score = 152 bits (168), Expect = 1e-31 Identities = 294/427 (69%), Gaps = 29/427 (7%) Strand=Plus/Minus Query 279029 AAAAAGAATGATGG-CA-AGAAGACCAATAAATTATATGGTATTCCAAAACTTGATGATG 279086 ||||||| ||||| || | |||| ||| || || | |||||||||||| | ||||||| Sbjct 601552 AAAAAGACGGATGGTCATAAAAGATCAAGAATTTCT--GGTATTCCAAAATTAGATGATG 601495 Query 279087 CAAACTGGGCTGGAGGTCGTAAATCTC---AAGAATGTGCTTTATTTCTTACTGAGGGAG 279143 |||| ||||| | |||| | |||| |||| |||| ||||||| || || | Sbjct 601494 CAAATAATGCTGG---TACAAAATATTCAAAAGATTGTGTTTTAATTCTTACGGAAGGGG 601438 Query 279144 ATTCTGCTGCTACATTTGCGATTGCTGGTTTATCTGTTATTGGTCGTGATAAATATGGCG 279203 ||||||| || || || ||| |||||| | || ||||||||||||| ||||| | Sbjct 601437 ATTCTGCCAAAACCTTAGCTATTAGTGGTTTGACAGTCGTTGGTCGTGATAATTATGGTG 601378 Query 279204 TATTTCCTTTAAGAGGTAAAGTAATTAATGCTCGTGATAAAATCACAACACAGGCTGGTT 279263 |||| || ||| | |||||| | | |||| ||||||| ||||| Sbjct 601377 TATTCCCATTACGTGGTAAAATGTTAAATGTTCGTGAT-GCCTCACA------------- 601332 Query 279264 TAAAGCAAGTAAATGCTAATGCTGAATTGATT--AATTTAAAACAAATATTGGGATTAGA 279321 |||| | | | | | |||||| ||| | | | |||| |||||||| | || ||| | Sbjct 601331 TAAATCTA-TTATGGATAATGCAGAAATTAGTGCAATT--AAACAAATTCTTGGTTTACA 601275 Query 279322 GCAAGGTAAAAAATACAAAGATACATCAAGTTTACGATATGGTAAAATTATTATTTTGAC 279381 || |||||| || | | ||||| |||||| ||||||| | ||||| || |||| Sbjct 601274 ACATGGTAAAGTGTATACAAATACAGATAGTTTAAGATATGGACATATTATGATCATGAC 601215 Query 279382 AGACCAAGATTTAGATGGAAGTCACATTAAAGGATTAATACTTAATTGGGTTGATACTTT 279441 || |||||| ||||| ||||||||| ||||| || |||||| | ||| ||| Sbjct 601214 GGATCAAGATACGGATGGTTCTCACATTAAGGGATTGTTAATTAATTTCTTAGATCATTT 601155 Query 279442 CTGGCCA 279448 |||||| Sbjct 601154 TTGGCCA 601148 >seq68 Length=876198 Score = 136 bits (150), Expect = 9e-27 Identities = 483/737 (66%), Gaps = 41/737 (6%) Strand=Plus/Plus Query 304865 GTTATTGATTATTCAAACAAT-TTACAATATCATATTGCAACATTAATGGATAATGAAAT 304923 |||| ||| ||| || || | ||||||| ||| | || ||| | ||||||||||| || Sbjct 165237 GTTAATGAGTATG-AATCATTATTACAATTCCATGTAGCTACACTTATGGATAATGATAT 165295 Query 304924 TGCTGGAATTATGCAGGC-ATCTCAAAGATCTGGCAGACCTTTAAAGGGTATTAGGCAAC 304982 ||||| || || || || ||||| ||| ||||||||||||| ||||| || Sbjct 165296 GGCTGGTATGCCACAAGCTATGCAAAAGAG-TGGTAGACCTTTAAAGGCAATTAGAGCAC 165354 Query 304983 GCATTAAAGGTAAAGAGGGTCGTATTCGAGGTAATCTAATGGGAAAACGTGTTGATTTTA 305042 | | || |||||||| ||| | || || |||||| ||||| || ||||| |||||| Sbjct 165355 GTTTAAAGGGTAAAGAAGGTAGAATCCGTAATAATCTTATGGGTAAGCGTGTGGATTTTT 165414 Query 305043 GTGCAAGAAGTGTAATCACACCTGATTCTCAAATTAGTCTTCATGAATTAGGAGTTCCAA 305102 ||| | | ||| || || |||| || | ||| | || || || |||| || |||| Sbjct 165415 CTGCTCGTACTGTTATTACTGGTGATCCTAATATTTCTATTGATCAAGTAGGTGTACCAA 165474 Query 305103 TTGAA--ATTGCTTTAAAACTAACATTTCCAGAGAAAGTTAACGAGAAAAATAT---TAA 305157 ||| |||||| ||| ||||||| ||||| | ||| | | | ||||| | | Sbjct 165475 --GAAGTATTGCTAGAAATTTAACATTCCCAGAAACAGTAACACAATATAATATAGATGA 165532 Query 305158 ACATTTGAGACGTTGTGTTCTTAATGG---AAATAGCAAGTATCCAGGTGCTCGTGCTGT 305214 || || | || | ||| ||||| |||| | |||| |||||| ||| Sbjct 165533 AC--TTCA-ACAATTTGTCAACAATGGTCCAAATG---AACATCCTGGTGCTAAATATGT 165586 Query 305215 TATAAAACACAAGCAAAAGAAGACAATATCTTTGAACCATA-TCGATTTAAAACAATTCA 305273 | ||| | || | | | ||| ||| || | | || | || |||| Sbjct 165587 ATTTAAAGATAATGG---GGATAGAATTGATTTAAAGTTTGCTAGAAGTGGAAGTGTTCA 165643 Query 305274 GTAAAATGCTTGAAATTAATGATATTGTTATCAGACATTTGAATGACAATGATTGGGTTC 305333 | | | |||| | ||| ||| | ||| | ||||| ||||| ||| Sbjct 165644 TTTACA-------AATTGGTTATAAAGTTGAACGTCATATTAATGATGGTGATTTAGTTA 165696 Query 305334 TGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTAT 305393 | |||||| | ||||||||| | || |||||| |||||||| ||| ||||| | ||| Sbjct 165697 TTTTCAATCGTCAACCATCATTACACAAAATGAGTATGATGGGTCACAAAGTTAGAGT-- 165754 Query 305394 TAT-CTGGATTG-ACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTT 305451 ||| | ||| || || || |||||| || || | | || ||||| || ||||| Sbjct 165755 TATGCCATATTCCACTTTCCGTTTAAATTTATCTGTTACATCTCCATATAACGCTGATTT 165814 Query 305452 TGATGGAGATGAAATGAATATGCATGTACCTCAATCAAAGGTTACAATGACTGAATTATC 305511 |||||| |||||||||||| | || || ||||||||| | | |||| ||||| | Sbjct 165815 TGATGGTGATGAAATGAATTTACACGTTCCTCAATCATATGAAACAAAAGCTGAAATTCA 165874 Query 305512 AGAAATATGTTCTGTATCAAAACTTATCATTTCTCCT---GCTATAAATGCTCCAATAAT 305568 |||| | ||| ||| |||||| || |||||||| |||| || ||| | || Sbjct 165875 AGAACTTTGTATGGTACCAAAACAAATTGTTTCTCCTCAAGCTAACAA---ACCAGTTAT 165931 Query 305569 CGAATTTGTACAAGATA 305585 | |||||||||||| Sbjct 165932 GGGTATTGTACAAGATA 165948 >seq172 Length=471331 Score = 95.1 bits (104), Expect = 3e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 167205 ATTTCAAAAGAGCACCTAAAATCTTTATTAATTATCATTACACCACCAGCATTATCGAAT 167264 |||||||| || || ||||||| ||||| | ||| ||| |||| |||||| ||| Sbjct 470091 ATTTCAAAGGAACAAAGTAAATCTTCATTAACAAGCATAACAGCACCGTTATTATCAAAT 470150 Query 167265 TCATTCGCATAATTTGGTGCTGAAAATACAGTAACTAATTTACGATTGAAAAATAATTCA 167324 ||| |||||||||||| |||||||||||| ||| | | ||| || |||||| Sbjct 470151 TCACCACAATAATTTGGTGCACTAAATACAGTAACCAATATTCTATTACCGAAAAATTCA 470210 Query 167325 TAACCATCTTCAACAAC 167341 ||||||||||| ||||| Sbjct 470211 TAACCATCTTCTACAAC 470227 >seq194 Length=295662 Score = 91.5 bits (100), Expect = 3e-13 Identities = 146/204 (72%), Gaps = 8/204 (4%) Strand=Plus/Plus Query 167239 TCATTACACCACCAGCATTATCGAATTCATTCGCA-TAATTTGGTGCTGAAAATACAGTA 167297 |||| | | | ||||||||||| |||||| | || |||||||| ||||| || | |||| Sbjct 65247 TCATCATAGCTCCAGCATTATCAAATTCA-CCACAGTAATTTGGAGCTGAGAAAAGAGTA 65305 Query 167298 ACTAATTTACGATTGAAAAATAATTCATAACCATCTTCAACAACTTCATGGGCACG---T 167354 ||||||| ||| || || ||||||||||||||||| || |||| || ||||| Sbjct 65306 ACTAATTGACGTTTAGCGAAGAATTCATAACCATCTTCTACGACTTGGTGAGCACGACAA 65365 Query 167355 ATTACAAGTTCAACTCCTAtttttttAAGAAAATTAGTTAAAGCACGTAATCCAAATTTA 167414 ||| || | || || | ||| | |||||| || || | | || | ||| || || Sbjct 65366 ATT--AAATCTAAATCATGTTTCTGTAAGAATCTT-GTAACAACATCTGGTCCGAAAGTA 65422 Query 167415 TAACTACAACCTCTTTCAGATTCA 167438 ||||| |||||| ||| |||| Sbjct 65423 AAACTAACACCTCTATCATTTTCA 65446 >seq211 Length=1236215 Score = 89.7 bits (98), Expect = 1e-12 Identities = 115/156 (74%), Gaps = 6/156 (4%) Strand=Plus/Plus Query 167194 TTTATCGAAATATTTCAAAAGAGCACCTAAAATCTTTATTAATTATCATTACACCACCAG 167253 || || ||| ||||||||| || || || |||||||| || ||| | ||||| Sbjct 31378 TTGATGGAATTATTTCAAAGGAACATAAAAGATCTTTATCAACCGACATAATTGCACCAT 31437 Query 167254 CATTATCGAATTCATTCGCATAATTTGGTG--CTGAAAATACAGTAACTAATTTACGATT 167311 |||||| |||||| ||||||||||| |||||||| |||||||||| | ||| Sbjct 31438 TATTATCAAATTCACCACAATAATTTGGTGCACTGAAAAT--AGTAACTAATGATCTATT 31495 Query 167312 GAAAAATAATTCATAACCATCTTCAACAACTTCATG 167347 ||| |||||| ||||||||||||||| ||||| Sbjct 31496 ACCAAAGAATTCAAAACCATCTTCAACAA--TCATG 31529 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186809272198952