Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Piromyces_20finnis_20[genbank_20GCA_5F002104945.1_202017-04-20] 232 sequences; 56,455,805 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq193 104 6e-17 seq135 102 2e-16 seq182 100 7e-16 seq101 84.2 5e-11 >seq193 Length=296419 Score = 104 bits (114), Expect = 6e-17 Identities = 179/254 (70%), Gaps = 7/254 (3%) Strand=Plus/Minus Query 206140 TTAAGAA-ATAT-ATAAAGTAAGGCTAAAATGTACCAGATATTTTGCAAA-ACGCTCACA 206196 ||||| | |||| ||||| ||| | |||||| || || ||| | ||| || | || Sbjct 33825 TTAAGCATATATTATAAAATAACTCAAAAATG---CAAAT-TTTCGTAAAGACTTTAACT 33770 Query 206197 GGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAAAAG 206256 || ||||| || ||||| ||||| ||| ||||||||| | ||| || ||| |||| Sbjct 33769 GGTAAAACTATTACTTTAGAAGTTGAATCTTCTGACACTATTGAAAACGTCAAGTCAAAG 33710 Query 206257 ATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAGCAG 206316 |||||||| || ||||| ||| || || ||| | | || || || || ||||| Sbjct 33709 ATTCAAGATAAGGAAGGTATTCCACCAGATCAACAACGTTTAATTTTTGCTGGTAAGCAA 33650 Query 206317 TTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCACCTT 206376 || ||||||||| | ||| | | || ||||| | || ||||| || ||||||||| | Sbjct 33649 TTAGAAGATGGACGTACTCTTTCTGACTACAATATTCAAAAAGAATCCACTCTTCACTTA 33590 Query 206377 GTTTTGAGACTTCG 206390 || || | ||||| Sbjct 33589 GTCTTACGTCTTCG 33576 Score = 102 bits (112), Expect = 2e-16 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || || ||||| || ||||| ||||| ||| ||||||||| | ||| Sbjct 32869 AAAACTTTAACTGGTAAAACTATTACTTTAGAAGTTGAATCTTCTGACACTATTGAAAAC 32810 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| |||||||||||| || ||||| ||| || || ||| | | || || Sbjct 32809 GTCAAGTCAAAGATTCAAGATAAGGAAGGTATTCCACCAGATCAACAACGTTTAATTTTT 32750 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || || || || ||||||||| | ||| | | || ||||| | || ||||| ||| Sbjct 32749 GCTGGTAAACAATTAGAAGATGGACGTACTCTTTCTGACTACAATATTCAAAAAGAATCT 32690 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||||||| | || || | ||||| Sbjct 32689 ACTCTTCACTTAGTCTTACGTCTTCG 32664 Score = 98.7 bits (108), Expect = 2e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || || ||||| || ||||| ||||| ||| ||||||||| | ||| || ||| | Sbjct 33088 ACTGGTAAAACTATTACTTTAGAAGTTGAATCTTCTGACACTATTGAAAACGTCAAGTCA 33029 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||||||||| || ||||| ||| || || ||| | | || || || || || Sbjct 33028 AAGATTCAAGATAAGGAAGGTATTCCACCAGATCAACAACGTTTAATTTTTGCTGGTAAA 32969 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 || || ||||||||| | ||| | | |||||||| | || ||||| || ||||||||| Sbjct 32968 CAATTAGAAGATGGACGTACTCTTTCTGATTACAATATTCAAAAAGAATCCACTCTTCAC 32909 Query 206374 CTTGTTTTGAGACTTCG 206390 | || || | ||||| Sbjct 32908 TTAGTCTTACGTCTTCG 32892 Score = 98.7 bits (108), Expect = 2e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || || ||||| || ||||| ||||| ||| ||||||||| | ||| || ||| | Sbjct 33316 ACTGGTAAAACTATTACTTTAGAAGTTGAATCTTCTGACACTATTGAAAATGTCAAGTCA 33257 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||||||||| || ||||| ||| || || ||| | | || || || || || Sbjct 33256 AAGATTCAAGATAAGGAAGGTATTCCACCAGATCAACAACGTTTAATTTTTGCTGGTAAA 33197 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 || || ||||||||| | ||| | | || ||||| | || ||||| |||||||||||| Sbjct 33196 CAATTAGAAGATGGACGTACTCTTTCTGACTACAATATTCAAAAAGAATCTACTCTTCAC 33137 Query 206374 CTTGTTTTGAGACTTCG 206390 | || || | ||||| Sbjct 33136 TTAGTCTTACGTCTTCG 33120 Score = 95.1 bits (104), Expect = 3e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || || ||||| || ||||| ||||| ||| ||||||||| | ||| || ||| | Sbjct 33544 ACTGGTAAAACTATTACTTTAGAAGTTGAATCTTCTGACACTATTGAAAATGTCAAGTCA 33485 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||||||||| || ||||| ||| || || ||| | | || || || || || Sbjct 33484 AAGATTCAAGATAAGGAAGGTATTCCACCAGATCAACAACGTTTAATTTTTGCTGGTAAA 33425 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 || || ||||||||| | ||| | | || ||||| | || ||||| || ||||||||| Sbjct 33424 CAATTAGAAGATGGACGTACTCTTTCTGACTACAATATTCAAAAAGAATCCACTCTTCAC 33365 Query 206374 CTTGTTTTGAGACTTCG 206390 | || || | ||||| Sbjct 33364 TTAGTCTTACGTCTTCG 33348 >seq135 Length=816381 Score = 102 bits (112), Expect = 2e-16 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206174 AGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACA 206233 |||| ||| ||||| || ||||| || || || || || ||||| ||| ||||| | Sbjct 3576 AGATTTTTGTTAAAACTCTTACAGGTAAGACCATTACCTTAGAAGTTGAATCATCTGATA 3635 Query 206234 CAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAA 206293 | | ||| || ||| ||||||||||| || ||||| ||| || || ||| Sbjct 3636 CTATTGAAAATGTCAAGGCTAAGATTCAAGATAAGGAAGGTATTCCACCAGATCAACAAC 3695 Query 206294 GACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCC 206353 | | |||||||| || ||||| || ||||||||| | ||| | | ||||||||| | | Sbjct 3696 GTTTAATCTTCGCTGGTAAGCAATTAGAAGATGGACGTACTCTTTCTGATTACAACATTC 3755 Query 206354 AGAAAGAGTCTACTCTTCACCTTGTT 206379 | || || || ||||| || |||||| Sbjct 3756 AAAAGGAATCCACTCTCCATCTTGTT 3781 >seq182 Length=390966 Score = 100 bits (110), Expect = 7e-16 Identities = 142/197 (72%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 |||||| || || || || || || || | || || ||| || ||||| | ||| Sbjct 118394 CAAAACCCTTACGGGTAAGACCATTACCCTTGAGGTTGAATCCTCCGACACTATTGAAAA 118335 Query 206244 AGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCT 206302 || ||||| || ||| ||||| || ||||| ||| || ||| ||| | ||||||| Sbjct 118334 TGTCAAAGCTAA-GATCCAAGATAAGGAAGGTATTCCACCAGACCAACAACGTCTTATCT 118276 Query 206303 TCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGT 206362 ||||||| ||||| || |||||||| | || | | || |||||| |||| || || | Sbjct 118275 TCGCCGGTAAGCAATTAGAAGATGGTCGTACCCTTTCTGACTACAACATCCAAAAGGAAT 118216 Query 206363 CTACTCTTCACCTTGTT 206379 |||| |||||||||||| Sbjct 118215 CTACCCTTCACCTTGTT 118199 >seq101 Length=857073 Score = 84.2 bits (92), Expect = 5e-11 Identities = 130/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 101536 TTCAGCCACCTTCCGGAGGTAATTGTGCCTCTTCTCCTTTCTTAATCTCTCGAAACGAAG 101595 |||||| ||||| | || || ||||| | ||| || | | | | |||||||||| Sbjct 93398 TTCAGCAACCTTTCTGACATAGTTGTGACGCTTTTCTTCACGAAGACGAGCGAAACGAAG 93457 Query 101596 GGCAGATTGTCCTCCCCTCCCGTGTTTCTTTGGCAAAGAGACGTCAAAATTATGAAGAAT 101655 ||||||||| || || || ||||| |||||||| | | ||| || || |||| || Sbjct 93458 GGCAGATTGACCACCTCTACCGTGCTTCTTTGGAAGATCGACAAGAATCTTGTGAACAAC 93517 Query 101656 TTTCTTGGTGTTCCCAGAGAGAGTCGCGAAAAGAGCAGAAGAACCGTCAAGAATAATAAA 101715 || ||| ||| ||| |||||| ||||||||| | | ||| || | || ||| || Sbjct 93518 TTCTCTGGCGTTACCACTGAGAGTACCGAAAAGAGTACCATTACCATCCATAACAATGAA 93577 Query 101716 TCCGAA 101721 ||||| Sbjct 93578 ACCGAA 93583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181817287037672