Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Piromyces_20finnis_20[genbank_20GCA_5F002104945.1_202017-04-20] 232 sequences; 56,455,805 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq193 102 8e-17 seq135 82.4 7e-11 >seq193 Length=296419 Score = 102 bits (112), Expect = 8e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || ||||||||||| |||||||| | ||||| |||||| | |||||||| | | Sbjct 33147 GATTCTTTTTGAATATTGTAGTCAGAAAGAGTACGTCCATCTTCTAATTGTTTACCAGCA 33206 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 | |||| ||| ||||||||||| || || ||||| ||||| ||| ||| || | Sbjct 33207 AAAATTAAACGTTGTTGATCTGGTGGAATACCTTCCTTATCTTGAATCTTTGACTTGACA 33266 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | ||| | ||| || | | || ||||| | || | ||||||||||| | ||| ||| Sbjct 33267 TTTTCAATAGTGTCAGAAGATTCAACTTCTAAAGTAATAGTTTTACCAGTTAAAGTCTTT 33326 Query 132110 ATGAAAATCTGCAT 132123 | |||||| ||||| Sbjct 33327 ACGAAAATTTGCAT 33340 Score = 102 bits (112), Expect = 8e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || ||||||||||| |||||||| | ||||| |||||| | |||||||| | | Sbjct 33375 GATTCTTTTTGAATATTGTAGTCAGAAAGAGTACGTCCATCTTCTAATTGTTTACCAGCA 33434 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 | |||| ||| ||||||||||| || || ||||| ||||| ||| ||| || | Sbjct 33435 AAAATTAAACGTTGTTGATCTGGTGGAATACCTTCCTTATCTTGAATCTTTGACTTGACA 33494 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | ||| | ||| || | | || ||||| | || | ||||||||||| | ||| ||| Sbjct 33495 TTTTCAATAGTGTCAGAAGATTCAACTTCTAAAGTAATAGTTTTACCAGTTAAAGTCTTT 33554 Query 132110 ATGAAAATCTGCAT 132123 | |||||| ||||| Sbjct 33555 ACGAAAATTTGCAT 33568 Score = 98.7 bits (108), Expect = 9e-16 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || ||||||||||| |||||||| | ||||| |||||| | |||||||| | | Sbjct 32691 GATTCTTTTTGAATATTGTAGTCAGAAAGAGTACGTCCATCTTCTAATTGTTTACCAGCA 32750 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 | |||| ||| ||||||||||| || || ||||| ||||| ||| ||| || | Sbjct 32751 AAAATTAAACGTTGTTGATCTGGTGGAATACCTTCCTTATCTTGAATCTTTGACTTGACG 32810 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | ||| | ||| || | | || ||||| | || | ||||||||||| | |||||| Sbjct 32811 TTTTCAATAGTGTCAGAAGATTCAACTTCTAAAGTAATAGTTTTACCAGTTAAAGTTTTA 32870 Query 132110 ATGAAAATCTGCAT 132123 | ||||| ||||| Sbjct 32871 ACAAAAATTTGCAT 32884 Score = 98.7 bits (108), Expect = 9e-16 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || ||||||||||| ||||| || | ||||| |||||| | |||||||| | | Sbjct 32919 GATTCTTTTTGAATATTGTAATCAGAAAGAGTACGTCCATCTTCTAATTGTTTACCAGCA 32978 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 | |||| ||| ||||||||||| || || ||||| ||||| ||| ||| || | Sbjct 32979 AAAATTAAACGTTGTTGATCTGGTGGAATACCTTCCTTATCTTGAATCTTTGACTTGACG 33038 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | ||| | ||| || | | || ||||| | || | ||||||||||| | ||| ||| Sbjct 33039 TTTTCAATAGTGTCAGAAGATTCAACTTCTAAAGTAATAGTTTTACCAGTTAAAGTCTTT 33098 Query 132110 ATGAAAATCTGCAT 132123 | |||||| ||||| Sbjct 33099 ACGAAAATTTGCAT 33112 Score = 98.7 bits (108), Expect = 9e-16 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || ||||||||||| |||||||| | ||||| |||||| | || ||||| | | Sbjct 33603 GATTCTTTTTGAATATTGTAGTCAGAAAGAGTACGTCCATCTTCTAATTGCTTACCAGCA 33662 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 | |||| ||| ||||||||||| || || ||||| ||||| ||| ||| || | Sbjct 33663 AAAATTAAACGTTGTTGATCTGGTGGAATACCTTCCTTATCTTGAATCTTTGACTTGACG 33722 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | ||| | ||| || | | || ||||| | || | ||||||||||| | ||| ||| Sbjct 33723 TTTTCAATAGTGTCAGAAGATTCAACTTCTAAAGTAATAGTTTTACCAGTTAAAGTCTTT 33782 Query 132110 ATGAAAATCTGCAT 132123 | |||||| ||||| Sbjct 33783 ACGAAAATTTGCAT 33796 >seq135 Length=816381 Score = 82.4 bits (90), Expect = 7e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||| || || | ||| | ||| | | || || |||||||||||||| || | || Sbjct 3793 ACGTAAACGAAGAACAAGATGGAGAGTGGATTCCTTTTGAATGTTGTAATCAGAAAGAGT 3734 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 ||| |||||| | || ||||| | |||||| ||| ||||||||||| || || || Sbjct 3733 ACGTCCATCTTCTAATTGCTTACCAGCGAAGATTAAACGTTGTTGATCTGGTGGAATACC 3674 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||| ||||| ||| || || | | ||| | |||||| | | || ||||| | Sbjct 3673 TTCCTTATCTTGAATCTTAGCCTTGACATTTTCAATAGTATCAGATGATTCAACTTCTAA 3614 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCT 132119 || | || ||||| || |||||||| | ||||||| Sbjct 3613 GGTAATGGTCTTACCTGTAAGAGTTTTAACAAAAATCT 3576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476609817827520