Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Piromyces_20finnis_20[genbank_20GCA_5F002104945.1_202017-04-20] 232 sequences; 56,455,805 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq193 149 6e-31 seq182 116 4e-21 seq135 102 8e-17 >seq193 Length=296419 Score = 149 bits (164), Expect = 6e-31 Identities = 173/231 (75%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 134484 TTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCG 134543 ||||| || | || || || || | ||| || || ||||| |||||||| |||||||| Sbjct 32655 TTTCCACCACGAAGACGTAAGACTAAGTGAAGAGTAGATTCTTTTTGAATATTGTAGTCA 32714 Query 134544 CCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGC 134603 || || | || || | ||||| || |||||||| ||||| || ||||| || Sbjct 32715 GAAAGAGTACGTCCATCTTCTAATTGTTTACCAGCAAAAATTAAACGTTGTTGATCTGGT 32774 Query 134604 GGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAAT-GTGTCGGACGATTC 134662 || || ||||| || |||||||| ||| ||||| | | |||| ||||| || ||||| Sbjct 32775 GGAATACCTTCCTTATCTTGAATCTTTGACTTGAC-GTTTTCAATAGTGTCAGAAGATTC 32833 Query 134663 CACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || | |||||| |||||||| |||||||||||||| ||||||||||| Sbjct 32834 AACTTCTAAAGTAATAGTTTTACCAGTTAAAGTTTTAACAAAAATTTGCAT 32884 Score = 145 bits (160), Expect = 8e-30 Identities = 167/222 (75%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || || || | ||| || |||||||| |||||||| |||||||| || || | Sbjct 33579 AGACGTAAGACTAAGTGAAGAGTGGATTCTTTTTGAATATTGTAGTCAGAAAGAGTACGT 33638 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || | || || || |||||||| ||||| || ||||| || || || ||||| Sbjct 33639 CCATCTTCTAATTGCTTACCAGCAAAAATTAAACGTTGTTGATCTGGTGGAATACCTTCC 33698 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAAT-GTGTCGGACGATTCCACGTCGAGAGT 134674 || |||||||| ||| ||||| | | |||| ||||| || ||||| || || | ||| Sbjct 33699 TTATCTTGAATCTTTGACTTGAC-GTTTTCAATAGTGTCAGAAGATTCAACTTCTAAAGT 33757 Query 134675 AATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTT 134716 ||| |||||||| |||||||| || ||||||||||||||||| Sbjct 33758 AATAGTTTTACCAGTTAAAGTCTTTACGAAAATTTGCATTTT 33799 Score = 141 bits (156), Expect = 9e-29 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || || || | ||| || |||||||| |||||||| |||||||| || || | Sbjct 33351 AGACGTAAGACTAAGTGAAGAGTGGATTCTTTTTGAATATTGTAGTCAGAAAGAGTACGT 33410 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || | ||||| || |||||||| ||||| || ||||| || || || ||||| Sbjct 33411 CCATCTTCTAATTGTTTACCAGCAAAAATTAAACGTTGTTGATCTGGTGGAATACCTTCC 33470 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || |||||||| ||| ||||| || | ||||| || ||||| || || | |||| Sbjct 33471 TTATCTTGAATCTTTGACTTGACATTTTCAATAGTGTCAGAAGATTCAACTTCTAAAGTA 33530 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || |||||||| |||||||| || |||||||||||||| Sbjct 33531 ATAGTTTTACCAGTTAAAGTCTTTACGAAAATTTGCAT 33568 Score = 140 bits (154), Expect = 3e-28 Identities = 164/219 (75%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || || || | ||| || |||||||| |||||||| ||||| || || || | Sbjct 32895 AGACGTAAGACTAAGTGAAGAGTGGATTCTTTTTGAATATTGTAATCAGAAAGAGTACGT 32954 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || | ||||| || |||||||| ||||| || ||||| || || || ||||| Sbjct 32955 CCATCTTCTAATTGTTTACCAGCAAAAATTAAACGTTGTTGATCTGGTGGAATACCTTCC 33014 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAAT-GTGTCGGACGATTCCACGTCGAGAGT 134674 || |||||||| ||| ||||| | | |||| ||||| || ||||| || || | ||| Sbjct 33015 TTATCTTGAATCTTTGACTTGAC-GTTTTCAATAGTGTCAGAAGATTCAACTTCTAAAGT 33073 Query 134675 AATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||| |||||||| |||||||| || |||||||||||||| Sbjct 33074 AATAGTTTTACCAGTTAAAGTCTTTACGAAAATTTGCAT 33112 Score = 136 bits (150), Expect = 4e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || || || | ||| || || ||||| |||||||| |||||||| || || | Sbjct 33123 AGACGTAAGACTAAGTGAAGAGTAGATTCTTTTTGAATATTGTAGTCAGAAAGAGTACGT 33182 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || | ||||| || |||||||| ||||| || ||||| || || || ||||| Sbjct 33183 CCATCTTCTAATTGTTTACCAGCAAAAATTAAACGTTGTTGATCTGGTGGAATACCTTCC 33242 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || |||||||| ||| ||||| || | ||||| || ||||| || || | |||| Sbjct 33243 TTATCTTGAATCTTTGACTTGACATTTTCAATAGTGTCAGAAGATTCAACTTCTAAAGTA 33302 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || |||||||| |||||||| || |||||||||||||| Sbjct 33303 ATAGTTTTACCAGTTAAAGTCTTTACGAAAATTTGCAT 33340 >seq182 Length=390966 Score = 116 bits (128), Expect = 4e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 || ||||| || || ||||||||||| ||||||||||| || ||| || || || Sbjct 118200 ACAAGGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCAGAAAGGGTACGACCATCTTCT 118259 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 | || || || || || || | ||| || || || || || || ||||| || ||||| Sbjct 118260 AATTGCTTACCGGCGAAGATAAGACGTTGTTGGTCTGGTGGAATACCTTCCTTATCTTGG 118319 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 || || |||||| || | |||||||| ||||| || || || |||||||| ||| Sbjct 118320 ATCTTAGCTTTGACATTTTCAATAGTGTCGGAGGATTCAACCTCAAGGGTAATGGTCTTA 118379 Query 134685 CCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || | ||||| ||||| |||||||| Sbjct 118380 CCCGTAAGGGTTTTGACGAAGATTTGCAT 118408 >seq135 Length=816381 Score = 102 bits (112), Expect = 8e-17 Identities = 152/215 (71%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 || || || || ||||||||||||||||||||||| || || || | || || Sbjct 3780 ACAAGATGGAGAGTGGATTCCTTTTGAATGTTGTAATCAGAAAGAGTACGTCCATCTTCT 3721 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 | || || || || || || ||||| || ||||| || || || ||||| || |||||| Sbjct 3720 AATTGCTTACCAGCGAAGATTAAACGTTGTTGATCTGGTGGAATACCTTCCTTATCTTGA 3661 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 || || ||||| || | || || || ||||| || || | |||||||| ||| Sbjct 3660 ATCTTAGCCTTGACATTTTCAATAGTATCAGATGATTCAACTTCTAAGGTAATGGTCTTA 3601 Query 134685 CCGGTTAAAGTTTTAACGAAAATTTGCATTTTGTT 134719 || || | ||||||||| ||||| | ||||| || Sbjct 3600 CCTGTAAGAGTTTTAACAAAAATCT--ATTTTTTT 3568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505396934344640