Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Piromyces_20finnis_20[genbank_20GCA_5F002104945.1_202017-04-20] 232 sequences; 56,455,805 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq1 96.9 3e-15 seq154 87.8 1e-12 >seq1 Length=2625575 Score = 96.9 bits (106), Expect = 3e-15 Identities = 78/93 (84%), Gaps = 1/93 (1%) Strand=Plus/Plus Query 19430 CCAA-AATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAAT 19488 |||| |||||| |||||||| ||||| |||||||||||||| |||||||| ||||||||| Sbjct 1255471 CCAATAATTGTTAATGGTCCAGAAATTTTAAATAAATATGTTGGTCAATCTGAAGAAAAT 1255530 Query 19489 GTACGACGTTTGTTTGCTGACGCTGAAGAAGAA 19521 || || || ||||| || |||||| ||||| Sbjct 1255531 GTTAGAAAGTTATTTGCAGAAGCTGAAAAAGAA 1255563 >seq154 Length=675934 Score = 87.8 bits (96), Expect = 1e-12 Identities = 198/294 (67%), Gaps = 18/294 (6%) Strand=Plus/Plus Query 41049 ATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAA-CTG-- 41105 |||||||| ||||| |||||| |||| |||||||| | |||| ||| ||| ||| Sbjct 471307 ATGGCATTACCACCATGTCATATGTTTTGTCAGTTCTTTGTTTCAAATCCAGAAACTGAC 471366 Query 41106 ---------TCATGTCAAT-TGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTT 41155 ||||| || | | |||||||||||| |||| | ||| | || || || || Sbjct 471367 CCAAGTTTATCATG-CATTCTTTATCAAAGATCATGTGATGTTGGATTGGGCGTACCATT 471425 Query 41156 TAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACACGT--TACCAATTTAAAA 41213 || || || |||||| | | | || | | | ||||| ||||| | |||| ||| Sbjct 471426 CAATATTGCCAGTTATTCCTTATTAACATGTTTAATTGCCCACGTAATTGGAATT--AAA 471483 Query 41214 CCTGGTGAATTTGTTCACACGTTAGGAGATGGACATATTTACATTAATCACATAGAGCCG 41273 ||||| ||| |||| | |||||| ||||| || | |||||| || || | Sbjct 471484 CCTGGAACTTTTATTCATGATATGGGAGATACTCATATATATAATAATCATATTGAAGCT 471543 Query 41274 TTAACAGAACAACTGACACGAAAACCTAGACCATTTCCAACGCTACTTATTAAA 41327 | ||||||| | | | |||| || |||||||| |||| | || |||| ||| Sbjct 471544 CTCCAAGAACAAATTAAAAGAAATCCAAGACCATTCCCAAAGTTAATTATAAAA 471597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397454876193160