Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Piromyces_20finnis_20[genbank_20GCA_5F002104945.1_202017-04-20] 232 sequences; 56,455,805 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq193 178 1e-39 seq182 176 5e-39 seq135 159 4e-34 seq57 129 7e-25 seq112 107 2e-18 >seq193 Length=296419 Score = 178 bits (196), Expect = 1e-39 Identities = 176/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| || || ||||| | || || || ||||||||| | || ||||| || Sbjct 33797 AATGCAAATTTTCGTAAAGACTTTAACTGGTAAAACTATTACTTTAGAAGTTGAATCTTC 33738 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | |||| ||| | ||| | || ||||| || ||||| || ||||| ||||| || Sbjct 33737 TGACACTATTGAAAACGTCAAGTCAAAGATTCAAGATAAGGAAGGTATTCCACCAGATCA 33678 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 || ||| |||||||||||||||||||| | || |||| ||||| || | ||||| || Sbjct 33677 ACAACGTTTAATTTTTGCTGGTAAGCAATTAGAAGATGGACGTACTCTTTCTGACTACAA 33618 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | | ||||| |||||||||||||| ||||||| |||||||| ||||| Sbjct 33617 TATTCAAAAAGAATCCACTCTTCACTTAGTCTTACGTCTTCGTGGTGG 33570 Score = 176 bits (194), Expect = 5e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || || ||||| | || || || ||||||||| | || ||||| || | Sbjct 33568 ATGCAAATTTTCGTAAAGACTTTAACTGGTAAAACTATTACTTTAGAAGTTGAATCTTCT 33509 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| |||| | ||| | || ||||| || ||||| || ||||| ||||| || Sbjct 33508 GACACTATTGAAAATGTCAAGTCAAAGATTCAAGATAAGGAAGGTATTCCACCAGATCAA 33449 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||| |||||||||||||||| ||| | || |||| ||||| || | ||||| ||| Sbjct 33448 CAACGTTTAATTTTTGCTGGTAAACAATTAGAAGATGGACGTACTCTTTCTGACTACAAT 33389 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | ||||| |||||||||||||| ||||||| |||||||| ||||| Sbjct 33388 ATTCAAAAAGAATCCACTCTTCACTTAGTCTTACGTCTTCGTGGTGG 33342 Score = 170 bits (188), Expect = 2e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || || ||||| | || || || ||||||||| | || ||||| || | Sbjct 33340 ATGCAAATTTTCGTAAAGACTTTAACTGGTAAAACTATTACTTTAGAAGTTGAATCTTCT 33281 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| |||| | ||| | || ||||| || ||||| || ||||| ||||| || Sbjct 33280 GACACTATTGAAAATGTCAAGTCAAAGATTCAAGATAAGGAAGGTATTCCACCAGATCAA 33221 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||| |||||||||||||||| ||| | || |||| ||||| || | ||||| ||| Sbjct 33220 CAACGTTTAATTTTTGCTGGTAAACAATTAGAAGATGGACGTACTCTTTCTGACTACAAT 33161 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | ||||| ||||| |||||||| ||||||| |||||||| ||||| Sbjct 33160 ATTCAAAAAGAATCTACTCTTCACTTAGTCTTACGTCTTCGTGGTGG 33114 Score = 168 bits (186), Expect = 8e-37 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| ||||| || || | || || || ||||||||| | || ||||| || | Sbjct 32884 ATGCAAATTTTTGTTAAAACTTTAACTGGTAAAACTATTACTTTAGAAGTTGAATCTTCT 32825 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| ||| | ||| | || ||||| || ||||| || ||||| ||||| || Sbjct 32824 GACACTATTGAAAACGTCAAGTCAAAGATTCAAGATAAGGAAGGTATTCCACCAGATCAA 32765 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||| |||||||||||||||| ||| | || |||| ||||| || | ||||| ||| Sbjct 32764 CAACGTTTAATTTTTGCTGGTAAACAATTAGAAGATGGACGTACTCTTTCTGACTACAAT 32705 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 | ||||| ||||| |||||||| ||||||| |||||||| |||||| Sbjct 32704 ATTCAAAAAGAATCTACTCTTCACTTAGTCTTACGTCTTCGTGGTGGA 32657 Score = 167 bits (184), Expect = 3e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || || ||||| | || || || ||||||||| | || ||||| || | Sbjct 33112 ATGCAAATTTTCGTAAAGACTTTAACTGGTAAAACTATTACTTTAGAAGTTGAATCTTCT 33053 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| ||| | ||| | || ||||| || ||||| || ||||| ||||| || Sbjct 33052 GACACTATTGAAAACGTCAAGTCAAAGATTCAAGATAAGGAAGGTATTCCACCAGATCAA 32993 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||| |||||||||||||||| ||| | || |||| ||||| || | || || ||| Sbjct 32992 CAACGTTTAATTTTTGCTGGTAAACAATTAGAAGATGGACGTACTCTTTCTGATTACAAT 32933 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | ||||| |||||||||||||| ||||||| |||||||| ||||| Sbjct 32932 ATTCAAAAAGAATCCACTCTTCACTTAGTCTTACGTCTTCGTGGTGG 32886 >seq182 Length=390966 Score = 176 bits (194), Expect = 5e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| ||||| || ||||| || ||||| ||||| ||||||||||| || Sbjct 118408 ATGCAAATCTTCGTCAAAACCCTTACGGGTAAGACCATTACCCTTGAGGTTGAATCCTCC 118349 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| |||| | || ||||| || || || ||||| || ||||| |||||||| Sbjct 118348 GACACTATTGAAAATGTCAAAGCTAAGATCCAAGATAAGGAAGGTATTCCACCAGACCAA 118289 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| || || || ||||||||| | || |||| ||||||||| | ||||| || Sbjct 118288 CAACGTCTTATCTTCGCCGGTAAGCAATTAGAAGATGGTCGTACCCTTTCTGACTACAAC 118229 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||||||||||| || ||||| || || | ||| | || ||||| Sbjct 118228 ATCCAAAAGGAATCTACCCTTCACCTTGTTCTTCGTTTACGTGGTGG 118182 >seq135 Length=816381 Score = 159 bits (176), Expect = 4e-34 Identities = 168/221 (76%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 27412 ATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGC 27471 || ||||| || || ||||| || ||||| ||||| | || ||||| ||| ||||| Sbjct 3578 ATTTTTGTTAAAACTCTTACAGGTAAGACCATTACCTTAGAAGTTGAATCATCTGATACT 3637 Query 27472 ATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGT 27531 |||| |||| | |||||||| ||||| || ||||| || ||||| ||||| || || ||| Sbjct 3638 ATTGAAAATGTCAAGGCTAAGATTCAAGATAAGGAAGGTATTCCACCAGATCAACAACGT 3697 Query 27532 CTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAA 27591 |||| || |||||||||||| | || |||| ||||| || | || || || | ||| Sbjct 3698 TTAATCTTCGCTGGTAAGCAATTAGAAGATGGACGTACTCTTTCTGATTACAACATTCAA 3757 Query 27592 AAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||||||||||||| ||||| || | ||| | || ||||| Sbjct 3758 AAGGAATCCACTCTCCATCTTGTTCTTCGTTTACGTGGTGG 3798 >seq57 Length=911805 Score = 129 bits (142), Expect = 7e-25 Identities = 139/184 (76%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 27412 ATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGC 27471 || ||||| ||||| |||||||| |||||||| || ||||||||||| || || ||| Sbjct 75636 ATTTTTGTAAAGACCCTTACCGGAAAGACTATCACCCTTGAGGTTGAATCTTCCGACAGC 75577 Query 27472 ATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGT 27531 |||| ||| | ||| || || || || ||||| || ||||| ||||| || || ||| Sbjct 75576 ATTGTTAATGTAAAGAACAAGATCCAAGAAAAGGAAGGTATTCCACCAGATCAACAACGT 75517 Query 27532 CTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAA 27591 |||| || |||||||||||| | || || | ||||| || | ||||| || ||||| Sbjct 75516 TTAATCTTCGCTGGTAAGCAATTAGAAGACAACCGTACTCTTTCCGACTACAACATCCAA 75457 Query 27592 AAGG 27595 |||| Sbjct 75456 AAGG 75453 >seq112 Length=1961624 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27399 TACTATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGA 27458 || ||||| | || || ||||| || ||||| || |||||||| || ||||||||||| Sbjct 1853597 TAATATAAAATAGATTTTCGTCAAAACCCTTACTGGAAAGACTATAACCCTTGAGGTTGA 1853656 Query 27459 GTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCC 27518 ||| || || |||| ||| | ||| || ||||| || ||||| || ||||| || Sbjct 1853657 GTCTTCCGACAGTATTGTCAATGTTAAGAACAAGATTCAAGAAAAGGAAGGTATTCCACC 1853716 Query 27519 AGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGA 27578 |||||| || ||| |||| || || ||||| ||| | || || | | || || | || Sbjct 1853717 AGACCAACAACGTTTAATCTTCGCCGGTAAACAATTAGAAGACAACAGAACTCTTTCTGA 1853776 Query 27579 CTATAATGTCCAAAAGG 27595 ||| || | ||||||| Sbjct 1853777 CTACAACATTCAAAAGG 1853793 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570308746099840