Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Piromyces_20finnis_20[genbank_20GCA_5F002104945.1_202017-04-20] 232 sequences; 56,455,805 total letters Query= NC_028762.1 Length=161989 Score E Sequences producing significant alignments: (Bits) Value seq180 89.7 5e-13 seq164 89.7 5e-13 seq44 82.4 8e-11 >seq180 Length=401682 Score = 89.7 bits (98), Expect = 5e-13 Identities = 92/119 (77%), Gaps = 1/119 (1%) Strand=Plus/Plus Query 55591 AAATCTGACGGCATACCCAGAAACGCGAATTGTTAATTGTGGATATTTTTCAGGATGTTC 55650 |||| |||| ||||| |||||||| ||||| ||||| | |||||| ||||| ||||| | Sbjct 30905 AAAT-TGACAGCATATCCAGAAACACGAATAGTTAAGTTTGGATAGTTTTCTGGATGAGC 30963 Query 55651 TTTAGCATCTAACAACATTTCTTTATTAAGAACATTGACATTCAGATGTTGTCCACCTT 55709 |||||||| || |||| ||||||||||| ||||| ||||| || |||||| Sbjct 30964 CATAGCATCTTCTAAGGTTTCACGTTTAAGAACATTAACATTAAGATGATGGGCACCTT 31022 >seq164 Length=541120 Score = 89.7 bits (98), Expect = 5e-13 Identities = 92/119 (77%), Gaps = 1/119 (1%) Strand=Plus/Plus Query 55591 AAATCTGACGGCATACCCAGAAACGCGAATTGTTAATTGTGGATATTTTTCAGGATGTTC 55650 |||| |||| ||||| |||||||| ||||| ||||| | |||||| ||||| ||||| | Sbjct 5196 AAAT-TGACAGCATATCCAGAAACACGAATGGTTAAGTTTGGATAGTTTTCTGGATGAGC 5254 Query 55651 TTTAGCATCTAACAACATTTCTTTATTAAGAACATTGACATTCAGATGTTGTCCACCTT 55709 |||||||| || |||| ||||||||||| ||||| ||||| || |||||| Sbjct 5255 CATAGCATCTTCTAAGGTTTCACGTTTAAGAACATTAACATTAAGATGATGGGCACCTT 5313 >seq44 Length=28038 Score = 82.4 bits (90), Expect = 8e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 55555 AATAACATCTTCTTTCTGTTCTGCAGTCAGAGAATTAAATCTGACGGCATACCCAGAAAC 55614 |||||| |||| || |||| || || | | ||| |||| ||||| ||||| || Sbjct 4813 AATAACTTCTTTTTGTTGTTGTGGTGTTAATTTAACAAAGTTGACAGCATATCCAGATAC 4754 Query 55615 GCGAATTGTTAATTGTGGATATTTTTCAGGATGTTCTTTAGCATCTAACAACATTTCTTT 55674 ||||| |||| | |||||| ||||| ||||| | |||||||| || ||||| Sbjct 4753 TCGAATAGTTAGGTTTGGATAGTTTTCTGGATGAGCCATAGCATCTTCTAATGTTTCTCG 4694 Query 55675 ATTAAGAACATTGACATTCAGATGTTGTCCACCTT 55709 ||||||||||| ||||| ||||| || | |||| Sbjct 4693 CTTAAGAACATTAACATTGAGATGATGGGCCCCTT 4659 Score = 82.4 bits (90), Expect = 8e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 55555 AATAACATCTTCTTTCTGTTCTGCAGTCAGAGAATTAAATCTGACGGCATACCCAGAAAC 55614 |||||| |||| || |||| || || | | ||| |||| ||||| ||||| || Sbjct 5473 AATAACTTCTTTTTGTTGTTGTGGTGTTAATTTAACAAAGTTGACAGCATATCCAGATAC 5532 Query 55615 GCGAATTGTTAATTGTGGATATTTTTCAGGATGTTCTTTAGCATCTAACAACATTTCTTT 55674 ||||| |||| | |||||| ||||| ||||| | |||||||| || ||||| Sbjct 5533 TCGAATAGTTAGGTTTGGATAGTTTTCTGGATGAGCCATAGCATCTTCTAATGTTTCTCG 5592 Query 55675 ATTAAGAACATTGACATTCAGATGTTGTCCACCTT 55709 ||||||||||| ||||| ||||| || | |||| Sbjct 5593 CTTAAGAACATTAACATTGAGATGATGGGCCCCTT 5627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 518235297113280