Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Piromyces_20finnis_20[genbank_20GCA_5F002104945.1_202017-04-20] 232 sequences; 56,455,805 total letters Query= NC_028773.1 Length=182145 Score E Sequences producing significant alignments: (Bits) Value seq57 93.3 5e-14 seq1 93.3 5e-14 seq154 87.8 2e-12 seq164 86.0 7e-12 >seq57 Length=911805 Score = 93.3 bits (102), Expect = 5e-14 Identities = 84/106 (79%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 125494 TCAGCATCTTAATGTCAATGTTCTGAATCGTGAAACGCTTCAAGATGCAGTAAAACATCC 125553 ||| ||||||||||| |||||||| || |||||||| | ||||||| | ||||| Sbjct 6233 TCATCATCTTAATGTTAATGTTCTTAAGCGTGAAACCTTAGAAGATGCTATGGCTCATCC 6174 Query 125554 TGAAAAATATCCTCAACTGACCATTCGTGTTTCTGGTTATGCAGTT 125599 ||||| ||||| | || || |||||||||||||||||||| ||| Sbjct 6173 AGAAAACTATCCAAATCTTACTATTCGTGTTTCTGGTTATGCTGTT 6128 >seq1 Length=2625575 Score = 93.3 bits (102), Expect = 5e-14 Identities = 84/106 (79%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 125494 TCAGCATCTTAATGTCAATGTTCTGAATCGTGAAACGCTTCAAGATGCAGTAAAACATCC 125553 ||| |||||||| || ||||| || || |||||||| ||| | ||||| | |||||| Sbjct 624043 TCACCATCTTAACGTTAATGTCCTCAAGCGTGAAACTCTTGAGGATGCTATGGCACATCC 624102 Query 125554 TGAAAAATATCCTCAACTGACCATTCGTGTTTCTGGTTATGCAGTT 125599 ||||| ||||| | || || |||||||||||||||||||| ||| Sbjct 624103 AGAAAATTATCCAAATCTTACTATTCGTGTTTCTGGTTATGCTGTT 624148 >seq154 Length=675934 Score = 87.8 bits (96), Expect = 2e-12 Identities = 88/113 (78%), Gaps = 1/113 (1%) Strand=Plus/Minus Query 125487 AAGGCGG-TCAGCATCTTAATGTCAATGTTCTGAATCGTGAAACGCTTCAAGATGCAGTA 125545 |||| || ||| |||||||| || |||||||| || |||||||| || ||||||| | Sbjct 318515 AAGGGGGCTCATCATCTTAACGTTAATGTTCTTAAACGTGAAACCCTAGAAGATGCTATG 318456 Query 125546 AAACATCCTGAAAAATATCCTCAACTGACCATTCGTGTTTCTGGTTATGCAGT 125598 ||||| ||||| ||||| | || || ||||||||||| |||||||| || Sbjct 318455 GTTCATCCAGAAAATTATCCAAACCTTACTATTCGTGTTTCCGGTTATGCTGT 318403 >seq164 Length=541120 Score = 86.0 bits (94), Expect = 7e-12 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 125487 AAGGCGGTCAGCATCTTAATGTCAATGTTCTGAATCGTGAAACGCTTCAAGATGCAGTAA 125546 |||| | || ||||||||||| |||||||| || |||||||| | ||||||| | Sbjct 5313 AAGGTGCCCATCATCTTAATGTTAATGTTCTTAAACGTGAAACCTTAGAAGATGCTATGG 5254 Query 125547 AACATCCTGAAAAATATCCTCAACTGACCATTCGTGTTTCTGGTTATGCAGT 125598 ||||| ||||| ||||| | | ||||||||||||||||| ||||| || Sbjct 5253 CTCATCCAGAAAACTATCCAAACTTAACCATTCGTGTTTCTGGATATGCTGT 5202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582734310065600