Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Piromyces_20finnis_20[genbank_20GCA_5F002104945.1_202017-04-20] 232 sequences; 56,455,805 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq193 136 3e-27 seq135 116 3e-21 seq57 98.7 7e-16 >seq193 Length=296419 Score = 136 bits (150), Expect = 3e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| |||||||| || || | || || ||||| || ||| | |||||||| || | Sbjct 33112 ATGCAAATTTTCGTAAAGACTTTAACTGGTAAAACTATTACTTTAGAAGTTGAATCTTCT 33053 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| |||||| | || ||| ||| || || |||||| | || ||||||||| Sbjct 33052 GACACTATTGAAAACGTCAAGTCAAAGATTCAAGATAAGGAAGGTATTCCACCAGATCAA 32993 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || |||||||| ||||| || |||||| | ||||| | ||| ||| | |||||||| Sbjct 32992 CAACGTTTAATTTTTGCTGGTAAACAATTAGAAGATGGACGTACTCTTTCTGATTACAAT 32933 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTA 23823 || |||||||| ||||| | || ||||| ||| Sbjct 32932 ATTCAAAAAGAATCCACTCTTCACTTAGTCTTA 32900 Score = 132 bits (146), Expect = 3e-26 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||| |||||||| | || || ||||| || ||| | |||||||| || | Sbjct 32884 ATGCAAATTTTTGTTAAAACTTTAACTGGTAAAACTATTACTTTAGAAGTTGAATCTTCT 32825 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| |||||| | || ||| ||| || || |||||| | || ||||||||| Sbjct 32824 GACACTATTGAAAACGTCAAGTCAAAGATTCAAGATAAGGAAGGTATTCCACCAGATCAA 32765 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || |||||||| ||||| || |||||| | ||||| | ||| ||| | || ||||| Sbjct 32764 CAACGTTTAATTTTTGCTGGTAAACAATTAGAAGATGGACGTACTCTTTCTGACTACAAT 32705 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTA 23823 || |||||||| || || | || ||||| ||| Sbjct 32704 ATTCAAAAAGAATCTACTCTTCACTTAGTCTTA 32672 Score = 132 bits (146), Expect = 3e-26 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| |||||||| || || | || || ||||| || ||| | |||||||| || | Sbjct 33568 ATGCAAATTTTCGTAAAGACTTTAACTGGTAAAACTATTACTTTAGAAGTTGAATCTTCT 33509 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| |||||| | || ||| ||| || || |||||| | || ||||||||| Sbjct 33508 GACACTATTGAAAATGTCAAGTCAAAGATTCAAGATAAGGAAGGTATTCCACCAGATCAA 33449 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || |||||||| ||||| || |||||| | ||||| | ||| ||| | || ||||| Sbjct 33448 CAACGTTTAATTTTTGCTGGTAAACAATTAGAAGATGGACGTACTCTTTCTGACTACAAT 33389 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTA 23823 || |||||||| ||||| | || ||||| ||| Sbjct 33388 ATTCAAAAAGAATCCACTCTTCACTTAGTCTTA 33356 Score = 132 bits (146), Expect = 3e-26 Identities = 159/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 |||||||| |||||||| || || | || || ||||| || ||| | |||||||| || Sbjct 33799 AAAATGCAAATTTTCGTAAAGACTTTAACTGGTAAAACTATTACTTTAGAAGTTGAATCT 33740 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | |||||| |||||| | || ||| ||| || || |||||| | || |||||| Sbjct 33739 TCTGACACTATTGAAAACGTCAAGTCAAAGATTCAAGATAAGGAAGGTATTCCACCAGAT 33680 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 ||||| |||||||| ||||| || || ||| | ||||| | ||| ||| | || ||| Sbjct 33679 CAACAACGTTTAATTTTTGCTGGTAAGCAATTAGAAGATGGACGTACTCTTTCTGACTAC 33620 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTA 23823 || || |||||||| ||||| | || ||||| ||| Sbjct 33619 AATATTCAAAAAGAATCCACTCTTCACTTAGTCTTA 33584 Score = 127 bits (140), Expect = 1e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| |||||||| || || | || || ||||| || ||| | |||||||| || | Sbjct 33340 ATGCAAATTTTCGTAAAGACTTTAACTGGTAAAACTATTACTTTAGAAGTTGAATCTTCT 33281 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| |||||| | || ||| ||| || || |||||| | || ||||||||| Sbjct 33280 GACACTATTGAAAATGTCAAGTCAAAGATTCAAGATAAGGAAGGTATTCCACCAGATCAA 33221 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || |||||||| ||||| || |||||| | ||||| | ||| ||| | || ||||| Sbjct 33220 CAACGTTTAATTTTTGCTGGTAAACAATTAGAAGATGGACGTACTCTTTCTGACTACAAT 33161 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTA 23823 || |||||||| || || | || ||||| ||| Sbjct 33160 ATTCAAAAAGAATCTACTCTTCACTTAGTCTTA 33128 >seq135 Length=816381 Score = 116 bits (128), Expect = 3e-21 Identities = 162/226 (72%), Gaps = 1/226 (0%) Strand=Plus/Plus Query 23596 AATTAATTACTTAAAATGC-AGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCT 23654 ||| ||||| |||||| ||||||| |||||||| || || || || || || || | Sbjct 3556 AATAAATTATTTAAAAAAATAGATTTTTGTTAAAACTCTTACAGGTAAGACCATTACCTT 3615 Query 23655 CGAAGTTGACTCCACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGG 23714 |||||||| || | || ||| |||||| | || || ||| || || ||||| Sbjct 3616 AGAAGTTGAATCATCTGATACTATTGAAAATGTCAAGGCTAAGATTCAAGATAAGGAAGG 3675 Query 23715 TGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCAC 23774 | | || ||||||||||| |||||||| || || || || ||| | ||||| | ||| || Sbjct 3676 TATTCCACCAGATCAACAACGTTTAATCTTCGCTGGTAAGCAATTAGAAGATGGACGTAC 3735 Query 23775 TTTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGTT 23820 | | ||||||||||| ||||| || ||||| | ||| | ||| Sbjct 3736 TCTTTCTGATTACAACATTCAAAAGGAATCCACTCTCCATCTTGTT 3781 >seq57 Length=911805 Score = 98.7 bits (108), Expect = 7e-16 Identities = 132/184 (72%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 23615 AGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACA 23674 ||||||| || || ||||| || ||||| || ||||| || || ||||| || | |||| Sbjct 75638 AGATTTTTGTAAAGACCCTTACCGGAAAGACTATCACCCTTGAGGTTGAATCTTCCGACA 75579 Query 23675 CTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGC 23734 ||| | |||| | || || || || |||||| | || ||||||||||| | Sbjct 75578 GCATTGTTAATGTAAAGAACAAGATCCAAGAAAAGGAAGGTATTCCACCAGATCAACAAC 75519 Query 23735 GTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATAC 23794 ||||||| || || || || ||| | |||||| | || ||| | ||| |||||||| | Sbjct 75518 GTTTAATCTTCGCTGGTAAGCAATTAGAAGACAACCGTACTCTTTCCGACTACAACATCC 75459 Query 23795 AAAA 23798 |||| Sbjct 75458 AAAA 75455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338008644277856