Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Piromyces_20finnis_20[genbank_20GCA_5F002104945.1_202017-04-20] 232 sequences; 56,455,805 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq193 163 7e-35 seq182 158 3e-33 seq135 152 1e-31 seq57 109 1e-18 seq1 104 6e-17 seq112 89.7 1e-12 >seq193 Length=296419 Score = 163 bits (180), Expect = 7e-35 Identities = 171/225 (76%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | | ||| | ||| ||||||||||||||||| | |||||| || | | ||| Sbjct 33575 ACGAAGACGTAAGACTAAGTGAAGAGTGGATTCTTTTTGAATATTGTAGTCAGAAAGAGT 33634 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||||| ||||| ||||| || || | |||||||| || || |||||||| Sbjct 33635 ACGTCCATCTTCTAATTGCTTACCAGCAAAAATTAAACGTTGTTGATCTGGTGGAATACC 33694 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||| ||||| |||||| ||| || ||| || ||||| || | ||| || ||||| Sbjct 33695 TTCCTTATCTTGAATCTTTGACTTGACGTTTTCAATAGTGTCAGAAGATTCAACTTCTAA 33754 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 || || || || || || ||||| |||| ||| | ||||||||| Sbjct 33755 AGTAATAGTTTTACCAGTTAAAGTCTTTACGAAAATTTGCATTTT 33799 Score = 158 bits (174), Expect = 3e-33 Identities = 168/222 (76%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | | ||| | ||| ||||||||||||||||| | ||||||||| | | ||| Sbjct 32891 ACGAAGACGTAAGACTAAGTGAAGAGTGGATTCTTTTTGAATATTGTAATCAGAAAGAGT 32950 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||||| || || ||||| || || | |||||||| || || |||||||| Sbjct 32951 ACGTCCATCTTCTAATTGTTTACCAGCAAAAATTAAACGTTGTTGATCTGGTGGAATACC 33010 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||| ||||| |||||| ||| || ||| || ||||| || | ||| || ||||| Sbjct 33011 TTCCTTATCTTGAATCTTTGACTTGACGTTTTCAATAGTGTCAGAAGATTCAACTTCTAA 33070 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || || || || ||||| |||| ||| | |||||| Sbjct 33071 AGTAATAGTTTTACCAGTTAAAGTCTTTACGAAAATTTGCAT 33112 Score = 158 bits (174), Expect = 3e-33 Identities = 168/222 (76%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | | ||| | ||| ||||||||||||||||| | |||||| || | | ||| Sbjct 33347 ACGAAGACGTAAGACTAAGTGAAGAGTGGATTCTTTTTGAATATTGTAGTCAGAAAGAGT 33406 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||||| || || ||||| || || | |||||||| || || |||||||| Sbjct 33407 ACGTCCATCTTCTAATTGTTTACCAGCAAAAATTAAACGTTGTTGATCTGGTGGAATACC 33466 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||| ||||| |||||| ||| ||| ||| || ||||| || | ||| || ||||| Sbjct 33467 TTCCTTATCTTGAATCTTTGACTTGACATTTTCAATAGTGTCAGAAGATTCAACTTCTAA 33526 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || || || || ||||| |||| ||| | |||||| Sbjct 33527 AGTAATAGTTTTACCAGTTAAAGTCTTTACGAAAATTTGCAT 33568 Score = 152 bits (168), Expect = 1e-31 Identities = 167/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | | ||| | ||| ||||| ||||||||||| | |||||| || | | ||| Sbjct 33119 ACGAAGACGTAAGACTAAGTGAAGAGTAGATTCTTTTTGAATATTGTAGTCAGAAAGAGT 33178 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||||| || || ||||| || || | |||||||| || || |||||||| Sbjct 33179 ACGTCCATCTTCTAATTGTTTACCAGCAAAAATTAAACGTTGTTGATCTGGTGGAATACC 33238 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||| ||||| |||||| ||| ||| ||| || ||||| || | ||| || ||||| Sbjct 33239 TTCCTTATCTTGAATCTTTGACTTGACATTTTCAATAGTGTCAGAAGATTCAACTTCTAA 33298 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || || || || ||||| |||| ||| | |||||| Sbjct 33299 AGTAATAGTTTTACCAGTTAAAGTCTTTACGAAAATTTGCAT 33340 Score = 143 bits (158), Expect = 6e-29 Identities = 165/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | | ||| | ||| ||||| ||||||||||| | |||||| || | | ||| Sbjct 32663 ACGAAGACGTAAGACTAAGTGAAGAGTAGATTCTTTTTGAATATTGTAGTCAGAAAGAGT 32722 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||||| || || ||||| || || | |||||||| || || |||||||| Sbjct 32723 ACGTCCATCTTCTAATTGTTTACCAGCAAAAATTAAACGTTGTTGATCTGGTGGAATACC 32782 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||| ||||| |||||| ||| || ||| || ||||| || | ||| || ||||| Sbjct 32783 TTCCTTATCTTGAATCTTTGACTTGACGTTTTCAATAGTGTCAGAAGATTCAACTTCTAA 32842 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || || || || |||||||| | || | |||||| Sbjct 32843 AGTAATAGTTTTACCAGTTAAAGTTTTAACAAAAATTTGCAT 32884 >seq182 Length=390966 Score = 158 bits (174), Expect = 3e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || |||||||| || || ||||| ||||||| ||||| || | | || | |||||| Sbjct 118197 AGAACAAGGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCAGAAAGGGTACGACCATCT 118256 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 |||| ||||| || ||||||||||| ||||||||||| || |||||||||||||| ||| Sbjct 118257 TCTAATTGCTTACCGGCGAAGATAAGACGTTGTTGGTCTGGTGGAATACCTTCCTTATCT 118316 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| || ||| ||| || ||||| |||| ||| || || | || || ||| Sbjct 118317 TGGATCTTAGCTTTGACATTTTCAATAGTGTCGGAGGATTCAACCTCAAGGGTAATGGTC 118376 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || ||||| | ||||| | ||| | |||||| Sbjct 118377 TTACCCGTAAGGGTTTTGACGAAGATTTGCAT 118408 >seq135 Length=816381 Score = 152 bits (168), Expect = 1e-31 Identities = 152/197 (77%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || ||||| |||||||||||||| ||||| | |||||||| | | ||| | |||||| Sbjct 3783 AGAACAAGATGGAGAGTGGATTCCTTTTGAATGTTGTAATCAGAAAGAGTACGTCCATCT 3724 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 |||| ||||| ||||||||||| | |||||||| || || |||||||||||||| ||| Sbjct 3723 TCTAATTGCTTACCAGCGAAGATTAAACGTTGTTGATCTGGTGGAATACCTTCCTTATCT 3664 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| ||| ||| ||| || || || || | ||| || ||||| || || ||| Sbjct 3663 TGAATCTTAGCCTTGACATTTTCAATAGTATCAGATGATTCAACTTCTAAGGTAATGGTC 3604 Query 225682 TTGCCCGTCAAAGTTTT 225698 || || || | |||||| Sbjct 3603 TTACCTGTAAGAGTTTT 3587 >seq57 Length=911805 Score = 109 bits (120), Expect = 1e-18 Identities = 129/175 (74%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585 ||||||| ||||| |||| | ||| | ||||||| ||||| ||||||||||| Sbjct 75455 TTTTGGATGTTGTAGTCGGAAAGAGTACGGTTGTCTTCTAATTGCTTACCAGCGAAGATT 75514 Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645 | |||||||| || || |||||||||||||| ||||||||||| | ||| ||| | Sbjct 75515 AAACGTTGTTGATCTGGTGGAATACCTTCCTTTTCTTGGATCTTGTTCTTTACATTAACA 75574 Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTA 225700 ||| |||| || | ||| || || | ||||| ||||| || || | || |||| Sbjct 75575 ATGCTGTCGGAAGATTCAACCTCAAGGGTGATAGTCTTTCCGGTAAGGGTCTTTA 75629 >seq1 Length=2625575 Score = 104 bits (114), Expect = 6e-17 Identities = 84/102 (82%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| ||||||||||| ||||| || |||| ||| || || ||||| |||||||||||||| Sbjct 1012458 GAAAATTTGACCATCTGTAATTGAAATAATATTAGTTGGAATATATGCAGAAACATCACC 1012399 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACC 4571 || | ||||| |||| |||||| ||||||| ||| ||||| Sbjct 1012398 ACCTAGAGTTTCAACAATAGGTAAAGCTGTTAATGAGCCACC 1012357 >seq112 Length=1961624 Score = 89.7 bits (98), Expect = 1e-12 Identities = 127/179 (71%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585 ||||| | ||||| || | | |||||| ||||||| || || || |||||||| Sbjct 1853791 TTTTGAATGTTGTAGTCAGAAAGAGTTCTGTTGTCTTCTAATTGTTTACCGGCGAAGATT 1853732 Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645 | ||||||||||| || |||||||||||||| ||||| ||||| | ||| ||| | Sbjct 1853731 AAACGTTGTTGGTCTGGTGGAATACCTTCCTTTTCTTGAATCTTGTTCTTAACATTGACA 1853672 Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAA 225704 || |||| || | || || || | || || ||||| || || | ||||| | ||| Sbjct 1853671 ATACTGTCGGAAGACTCAACCTCAAGGGTTATAGTCTTTCCAGTAAGGGTTTTGACGAA 1853613 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192527655201008