Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Piromyces_20finnis_20[genbank_20GCA_5F002104945.1_202017-04-20] 232 sequences; 56,455,805 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq182 116 9e-21 seq193 105 2e-17 seq112 91.5 3e-13 seq135 84.2 5e-11 >seq182 Length=390966 Score = 116 bits (128), Expect = 9e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || ||||| ||||| ||||| || |||||||||||||| || | | || | |||||| Sbjct 118197 AGAACAAGGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCAGAAAGGGTACGACCATCT 118256 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 |||| || |||||||||||||| | || ||||| | | || |||||||| ||| Sbjct 118257 TCTAATTGCTTACCGGCGAAGATAAGACGTTGTTGGTCTGGTGGAATACCTTCCTTATCT 118316 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || ||||||| | || | |||| || || || ||||| ||||| || Sbjct 118317 TGGATCTTAGCTTTGACATTTTCAATAGTGTCGGAGGATTCAACCTCAAGGGTAATGGTC 118376 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || || || ||||||| ||||| Sbjct 118377 TTACCCGTAAGGGTTTTGACGAAGATTTGCAT 118408 >seq193 Length=296419 Score = 105 bits (116), Expect = 2e-17 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 151902 TGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTT 151961 ||||||||||| |||||||| || ||||| || | | ||| | |||||||||| | Sbjct 33138 TGAAGAGTAGATTCTTTTTGAATATTGTAGTCAGAAAGAGTACGTCCATCTTCTAATTGT 33197 Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || || || || || | | || || || | | || |||||||| |||||||| ||| Sbjct 33198 TTACCAGCAAAAATTAAACGTTGTTGATCTGGTGGAATACCTTCCTTATCTTGAATCTTT 33257 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 |||||| | || | |||| ||| || ||||| | |||||||||||| || || Sbjct 33258 GACTTGACATTTTCAATAGTGTCAGAAGATTCAACTTCTAAAGTAATAGTTTTACCAGTT 33317 Query 152082 AGAGTCTTCACGAAGACCTGCAT 152104 | |||||| ||||| | ||||| Sbjct 33318 AAAGTCTTTACGAAAATTTGCAT 33340 Score = 100 bits (110), Expect = 7e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 151902 TGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTT 151961 |||||||| || |||||||| || |||||||| | | ||| | |||||||||| | Sbjct 32910 TGAAGAGTGGATTCTTTTTGAATATTGTAATCAGAAAGAGTACGTCCATCTTCTAATTGT 32969 Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || || || || || | | || || || | | || |||||||| |||||||| ||| Sbjct 32970 TTACCAGCAAAAATTAAACGTTGTTGATCTGGTGGAATACCTTCCTTATCTTGAATCTTT 33029 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 ||||| | || | |||| ||| || ||||| | |||||||||||| || || Sbjct 33030 GACTTGACGTTTTCAATAGTGTCAGAAGATTCAACTTCTAAAGTAATAGTTTTACCAGTT 33089 Query 152082 AGAGTCTTCACGAAGACCTGCAT 152104 | |||||| ||||| | ||||| Sbjct 33090 AAAGTCTTTACGAAAATTTGCAT 33112 Score = 100 bits (110), Expect = 7e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 151902 TGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTT 151961 |||||||| || |||||||| || ||||| || | | ||| | |||||||||| | Sbjct 33366 TGAAGAGTGGATTCTTTTTGAATATTGTAGTCAGAAAGAGTACGTCCATCTTCTAATTGT 33425 Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || || || || || | | || || || | | || |||||||| |||||||| ||| Sbjct 33426 TTACCAGCAAAAATTAAACGTTGTTGATCTGGTGGAATACCTTCCTTATCTTGAATCTTT 33485 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 |||||| | || | |||| ||| || ||||| | |||||||||||| || || Sbjct 33486 GACTTGACATTTTCAATAGTGTCAGAAGATTCAACTTCTAAAGTAATAGTTTTACCAGTT 33545 Query 152082 AGAGTCTTCACGAAGACCTGCAT 152104 | |||||| ||||| | ||||| Sbjct 33546 AAAGTCTTTACGAAAATTTGCAT 33568 Score = 96.9 bits (106), Expect = 8e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 151902 TGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTT 151961 |||||||| || |||||||| || ||||| || | | ||| | |||||||||| Sbjct 33594 TGAAGAGTGGATTCTTTTTGAATATTGTAGTCAGAAAGAGTACGTCCATCTTCTAATTGC 33653 Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || || || || || | | || || || | | || |||||||| |||||||| ||| Sbjct 33654 TTACCAGCAAAAATTAAACGTTGTTGATCTGGTGGAATACCTTCCTTATCTTGAATCTTT 33713 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 ||||| | || | |||| ||| || ||||| | |||||||||||| || || Sbjct 33714 GACTTGACGTTTTCAATAGTGTCAGAAGATTCAACTTCTAAAGTAATAGTTTTACCAGTT 33773 Query 152082 AGAGTCTTCACGAAGACCTGCATTTT 152107 | |||||| ||||| | |||||||| Sbjct 33774 AAAGTCTTTACGAAAATTTGCATTTT 33799 Score = 91.5 bits (100), Expect = 3e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 151902 TGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTT 151961 ||||||||||| |||||||| || ||||| || | | ||| | |||||||||| | Sbjct 32682 TGAAGAGTAGATTCTTTTTGAATATTGTAGTCAGAAAGAGTACGTCCATCTTCTAATTGT 32741 Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || || || || || | | || || || | | || |||||||| |||||||| ||| Sbjct 32742 TTACCAGCAAAAATTAAACGTTGTTGATCTGGTGGAATACCTTCCTTATCTTGAATCTTT 32801 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 ||||| | || | |||| ||| || ||||| | |||||||||||| || || Sbjct 32802 GACTTGACGTTTTCAATAGTGTCAGAAGATTCAACTTCTAAAGTAATAGTTTTACCAGTT 32861 Query 152082 AGAGTCTTCACGAAGACCTGCAT 152104 | ||| || || || | ||||| Sbjct 32862 AAAGTTTTAACAAAAATTTGCAT 32884 >seq112 Length=1961624 Score = 91.5 bits (100), Expect = 3e-13 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 151917 TTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATA 151976 ||||| |||||||| || | | |||||| ||||||| ||| ||||||||||| Sbjct 1853791 TTTTGAATGTTGTAGTCAGAAAGAGTTCTGTTGTCTTCTAATTGTTTACCGGCGAAGATT 1853732 Query 151977 AGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCT 152036 | | || ||||| | | || ||||||||||||||||| || | || ||| | | Sbjct 1853731 AAACGTTGTTGGTCTGGTGGAATACCTTCCTTTTCTTGAATCTTGTTCTTAACATTGACA 1853672 Query 152037 ACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAG 152096 | ||||| ||| ||| || ||||| || ||||| || || || || || || ||||| Sbjct 1853671 ATACTGTCGGAAGACTCAACCTCAAGGGTTATAGTCTTTCCAGTAAGGGTTTTGACGAAA 1853612 Query 152097 ACCTGCATTTTA 152108 | || |||||| Sbjct 1853611 ATCT--ATTTTA 1853602 >seq135 Length=816381 Score = 84.2 bits (92), Expect = 5e-11 Identities = 148/215 (69%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || |||||||| ||||| || || ||||| ||||||||||| | | ||| | |||||| Sbjct 3783 AGAACAAGATGGAGAGTGGATTCCTTTTGAATGTTGTAATCAGAAAGAGTACGTCCATCT 3724 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 |||| || || |||||||| | | || || || | | || |||||||| ||| Sbjct 3723 TCTAATTGCTTACCAGCGAAGATTAAACGTTGTTGATCTGGTGGAATACCTTCCTTATCT 3664 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||| || |||||| | || | | || || || ||||| | ||||| || Sbjct 3663 TGAATCTTAGCCTTGACATTTTCAATAGTATCAGATGATTCAACTTCTAAGGTAATGGTC 3604 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || || || ||||| || || || | || ||||| Sbjct 3603 TTACCTGTAAGAGTTTTAACAAAAATCT--ATTTT 3571 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153817370267672