Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Piromyces_20finnis_20[genbank_20GCA_5F002104945.1_202017-04-20] 232 sequences; 56,455,805 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq193 178 3e-39 seq182 178 3e-39 seq135 158 3e-33 seq57 125 1e-23 seq112 118 2e-21 >seq193 Length=296419 Score = 178 bits (196), Expect = 3e-39 Identities = 178/231 (77%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || | || | || | ||| ||||||||| || |||||||||| Sbjct 33569 ACCACCACGAAGACGTAAGACTAAGTGAAGAGTGGATTCTTTTTGAATATTGTAGTCAGA 33628 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || || ||||| |||| ||| || || ||||| || ||||||||||| || || Sbjct 33629 AAGAGTACGTCCATCTTCTAATTGCTTACCAGCAAAAATTAAACGTTGTTGATCTGGTGG 33688 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||| ||||| ||||| ||||||| || ||| | || |||||||| |||| ||| || Sbjct 33689 AATACCTTCCTTATCTTGAATCTTTGACTTGACGTTTTCAATAGTGTCAGAAGATTCAAC 33748 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 ||| | ||| || || ||||| || |||||||| ||||| || |||||||| Sbjct 33749 TTCTAAAGTAATAGTTTTACCAGTTAAAGTCTTTACGAAAATTTGCATTTT 33799 Score = 172 bits (190), Expect = 1e-37 Identities = 175/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || | || | || | ||| ||||||||| || ||||| |||| Sbjct 32885 ACCACCACGAAGACGTAAGACTAAGTGAAGAGTGGATTCTTTTTGAATATTGTAATCAGA 32944 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || || ||||| |||| |||||| || ||||| || ||||||||||| || || Sbjct 32945 AAGAGTACGTCCATCTTCTAATTGTTTACCAGCAAAAATTAAACGTTGTTGATCTGGTGG 33004 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||| ||||| ||||| ||||||| || ||| | || |||||||| |||| ||| || Sbjct 33005 AATACCTTCCTTATCTTGAATCTTTGACTTGACGTTTTCAATAGTGTCAGAAGATTCAAC 33064 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||| | ||| || || ||||| || |||||||| ||||| || ||||| Sbjct 33065 TTCTAAAGTAATAGTTTTACCAGTTAAAGTCTTTACGAAAATTTGCAT 33112 Score = 172 bits (190), Expect = 1e-37 Identities = 175/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || | || | || | ||| ||||||||| || |||||||||| Sbjct 33341 ACCACCACGAAGACGTAAGACTAAGTGAAGAGTGGATTCTTTTTGAATATTGTAGTCAGA 33400 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || || ||||| |||| |||||| || ||||| || ||||||||||| || || Sbjct 33401 AAGAGTACGTCCATCTTCTAATTGTTTACCAGCAAAAATTAAACGTTGTTGATCTGGTGG 33460 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||| ||||| ||||| ||||||| || || | || |||||||| |||| ||| || Sbjct 33461 AATACCTTCCTTATCTTGAATCTTTGACTTGACATTTTCAATAGTGTCAGAAGATTCAAC 33520 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||| | ||| || || ||||| || |||||||| ||||| || ||||| Sbjct 33521 TTCTAAAGTAATAGTTTTACCAGTTAAAGTCTTTACGAAAATTTGCAT 33568 Score = 168 bits (186), Expect = 1e-36 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || | || | || | || ||||||||| || |||||||||| Sbjct 33113 ACCACCACGAAGACGTAAGACTAAGTGAAGAGTAGATTCTTTTTGAATATTGTAGTCAGA 33172 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || || ||||| |||| |||||| || ||||| || ||||||||||| || || Sbjct 33173 AAGAGTACGTCCATCTTCTAATTGTTTACCAGCAAAAATTAAACGTTGTTGATCTGGTGG 33232 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||| ||||| ||||| ||||||| || || | || |||||||| |||| ||| || Sbjct 33233 AATACCTTCCTTATCTTGAATCTTTGACTTGACATTTTCAATAGTGTCAGAAGATTCAAC 33292 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||| | ||| || || ||||| || |||||||| ||||| || ||||| Sbjct 33293 TTCTAAAGTAATAGTTTTACCAGTTAAAGTCTTTACGAAAATTTGCAT 33340 Score = 167 bits (184), Expect = 5e-36 Identities = 152/192 (79%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 282908 TTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 ||||||||| || |||||||||| ||| || || ||||| |||| |||||| || ||||| Sbjct 32693 TTCTTTTTGAATATTGTAGTCAGAAAGAGTACGTCCATCTTCTAATTGTTTACCAGCAAA 32752 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027 || ||||||||||| || |||||||| ||||| ||||| ||||||| || ||| | Sbjct 32753 AATTAAACGTTGTTGATCTGGTGGAATACCTTCCTTATCTTGAATCTTTGACTTGACGTT 32812 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 || |||||||| |||| ||| ||||| | ||| || || ||||| || ||||| ||||| Sbjct 32813 TTCAATAGTGTCAGAAGATTCAACTTCTAAAGTAATAGTTTTACCAGTTAAAGTTTTAAC 32872 Query 283088 GAATATCTGCAT 283099 || || ||||| Sbjct 32873 AAAAATTTGCAT 32884 >seq182 Length=390966 Score = 178 bits (196), Expect = 3e-39 Identities = 176/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| | ||||| || || || | || ||| ||||||||||||||||||| Sbjct 118181 ACCACCACGTAAACGAAGAACAAGGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCAGA 118240 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || || ||||| |||| ||| || ||||| ||||| | |||||||||||| || Sbjct 118241 AAGGGTACGACCATCTTCTAATTGCTTACCGGCGAAGATAAGACGTTGTTGGTCTGGTGG 118300 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||| ||||| ||||||||||| ||||| || | || |||||||| || | ||| || Sbjct 118301 AATACCTTCCTTATCTTGGATCTTAGCTTTGACATTTTCAATAGTGTCGGAGGATTCAAC 118360 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || || || ||||||||||| | || || ||||| || ||||| Sbjct 118361 CTCAAGGGTAATGGTCTTACCCGTAAGGGTTTTGACGAAGATTTGCAT 118408 >seq135 Length=816381 Score = 158 bits (174), Expect = 3e-33 Identities = 174/231 (75%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| | ||||| || ||||| | ||| ||| ||||| |||||||| |||| Sbjct 3799 ACCACCACGTAAACGAAGAACAAGATGGAGAGTGGATTCCTTTTGAATGTTGTAATCAGA 3740 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || || ||||| |||| ||| || || || ||||| ||||||||||| || || Sbjct 3739 AAGAGTACGTCCATCTTCTAATTGCTTACCAGCGAAGATTAAACGTTGTTGATCTGGTGG 3680 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||| ||||| ||||| ||||| || || || | || ||||| || || | ||| || Sbjct 3679 AATACCTTCCTTATCTTGAATCTTAGCCTTGACATTTTCAATAGTATCAGATGATTCAAC 3620 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 ||| | || || |||||||| || | ||| ||||| || |||| ||||| Sbjct 3619 TTCTAAGGTAATGGTCTTACCTGTAAGAGTTTTAACAAAAATCT--ATTTT 3571 Score = 98.7 bits (108), Expect = 2e-15 Identities = 126/174 (72%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 44005 TACGGAAAGGTTCAGGAGATTCCTCAAACAGAAAGGACTCCGTTTTATCCCCGGAGTCCA 44064 || ||||| ||||| || || ||||||| |||| || || |||||||| || || Sbjct 662289 TATGGAAAAGTTCAAGAAATACCTCAAAATGAAAAAACACCATTTTATCCACGTTCACCC 662348 Query 44065 TATGGTGTGGCGAAGCTATATGCCTATTGGATTTGTAAAAATTATCGCGAGTCGTATGGG 44124 |||||||| || || ||||||||||||||||| | || ||||| || | ||| Sbjct 662349 TATGGTGTTGCTAAATTATATGCCTATTGGATTGTTGTTAACTATCGTGAAGCTTATAAT 662408 Query 44125 ATGTTCGTTTGTAATTCGATTTGTTTCAATCACGAAAGTCCCAACAGAGGTCAT 44178 ||||| | ||||||| || | || ||||| |||||||| | |||||| || Sbjct 662409 ATGTTTGCTTGTAATGGTATATTATTTAATCATGAAAGTCCAAGAAGAGGTAAT 662462 >seq57 Length=911805 Score = 125 bits (138), Expect = 1e-23 Identities = 138/184 (75%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 ||||||||||||||||| | ||| || ||| || |||| ||| || || || ||||| Sbjct 75455 TTTTGGATGTTGTAGTCGGAAAGAGTACGGTTGTCTTCTAATTGCTTACCAGCGAAGATT 75514 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031 ||||||||||| || |||||||| ||||| ||||||||||| ||||| || | Sbjct 75515 AAACGTTGTTGATCTGGTGGAATACCTTCCTTTTCTTGGATCTTGTTCTTTACATTAACA 75574 Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAAT 283091 || |||| |||| ||| || || || ||||| ||||| || || | ||||| || || Sbjct 75575 ATGCTGTCGGAAGATTCAACCTCAAGGGTGATAGTCTTTCCGGTAAGGGTCTTTACAAAA 75634 Query 283092 ATCT 283095 |||| Sbjct 75635 ATCT 75638 >seq112 Length=1961624 Score = 118 bits (130), Expect = 2e-21 Identities = 164/226 (73%), Gaps = 4/226 (2%) Strand=Plus/Minus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 ||||| ||||||||||||| ||| || | | || |||| |||||| ||||| ||||| Sbjct 1853791 TTTTGAATGTTGTAGTCAGAAAGAGTTCTGTTGTCTTCTAATTGTTTACCGGCGAAGATT 1853732 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031 |||||||||||||| |||||||| ||||| ||||| ||||| || || | | Sbjct 1853731 AAACGTTGTTGGTCTGGTGGAATACCTTCCTTTTCTTGAATCTTGTTCTTAACATTGACA 1853672 Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAAT 283091 ||| |||| |||| || || || || || || ||||| || || | || || ||||| Sbjct 1853671 ATACTGTCGGAAGACTCAACCTCAAGGGTTATAGTCTTTCCAGTAAGGGTTTTGACGAAA 1853612 Query 283092 ATCTGCATTTTCATA-TACAAATAtttttttAAGCGTGAGGATTTA 283136 |||| ||||| ||| || |||| || || | ||| | ||||| Sbjct 1853611 ATCT--ATTTT-ATATTATCAATAGTTATTAATACGTTAATATTTA 1853569 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046736088567728