Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Piromyces_20finnis_20[genbank_20GCA_5F002104945.1_202017-04-20] 232 sequences; 56,455,805 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq182 149 2e-30 seq193 122 2e-22 seq112 104 6e-17 >seq182 Length=390966 Score = 149 bits (164), Expect = 2e-30 Identities = 157/207 (76%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| ||||| || || || || || || ||||| ||||| ||| ||| ||| Sbjct 118405 CAAATCTTCGTCAAAACCCTTACGGGTAAGACCATTACCCTTGAGGTTGAATCCTCCGAC 118346 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || |||||| ||||| || || || ||||| || || || ||||| ||| Sbjct 118345 ACTATTGAAAATGTCAAAGCTAAGATCCAAGATAAGGAAGGTATTCCACCAGACCAACAA 118286 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || |||||||||||||| || || | |||||||| | || ||| | || || ||| || Sbjct 118285 CGTCTTATCTTCGCCGGTAAGCAATTAGAAGATGGTCGTACCCTTTCTGACTACAACATC 118226 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 ||||| ||||| || || || |||||| Sbjct 118225 CAAAAGGAATCTACCCTTCACCTTGTT 118199 >seq193 Length=296419 Score = 122 bits (134), Expect = 2e-22 Identities = 147/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || ||| | || || ||||| || || | || || ||| || ||| Sbjct 33109 CAAATTTTCGTAAAGACTTTAACTGGTAAAACTATTACTTTAGAAGTTGAATCTTCTGAC 33050 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || |||||||| ||||||||| || || ||||| || || || || || ||| Sbjct 33049 ACTATTGAAAACGTCAAGTCAAAGATTCAAGATAAGGAAGGTATTCCACCAGATCAACAA 32990 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || || || ||||| | ||||||||| | |||||| | ||||| || | Sbjct 32989 CGTTTAATTTTTGCTGGTAAACAATTAGAAGATGGACGTACTCTTTCTGATTACAATATT 32930 Query 178104 CAAAAAGAATCAACACTGCA 178123 ||||||||||| || || || Sbjct 32929 CAAAAAGAATCCACTCTTCA 32910 Score = 118 bits (130), Expect = 3e-21 Identities = 146/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || |||||| | || || ||||| || || | || || ||| || ||| Sbjct 32881 CAAATTTTTGTTAAAACTTTAACTGGTAAAACTATTACTTTAGAAGTTGAATCTTCTGAC 32822 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || |||||||| ||||||||| || || ||||| || || || || || ||| Sbjct 32821 ACTATTGAAAACGTCAAGTCAAAGATTCAAGATAAGGAAGGTATTCCACCAGATCAACAA 32762 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || || || ||||| | ||||||||| | |||||| | || || || | Sbjct 32761 CGTTTAATTTTTGCTGGTAAACAATTAGAAGATGGACGTACTCTTTCTGACTACAATATT 32702 Query 178104 CAAAAAGAATCAACACTGCA 178123 ||||||||||| || || || Sbjct 32701 CAAAAAGAATCTACTCTTCA 32682 Score = 118 bits (130), Expect = 3e-21 Identities = 169/235 (72%), Gaps = 5/235 (2%) Strand=Plus/Minus Query 177891 TTAAGAA-ATAT-ATAAAGTAAGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAG 177948 ||||| | |||| ||||| ||| ||||||| |||||||||| || ||| | || | Sbjct 33825 TTAAGCATATATTATAAAATAACTCAAAAATGC---AAATTTTCGTAAAGACTTTAACTG 33769 Query 177949 GAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGA 178008 | ||||| || || | || || ||| || ||||| || || |||||||| ||||| Sbjct 33768 GTAAAACTATTACTTTAGAAGTTGAATCTTCTGACACTATTGAAAACGTCAAGTCAAAGA 33709 Query 178009 TTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGC 178068 |||| || || ||||| || || || || || ||||| | || || || || || || Sbjct 33708 TTCAAGATAAGGAAGGTATTCCACCAGATCAACAACGTTTAATTTTTGCTGGTAAGCAAT 33649 Query 178069 TCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCA 178123 | ||||||||| | |||||| | || || || | ||||||||||| || || || Sbjct 33648 TAGAAGATGGACGTACTCTTTCTGACTACAATATTCAAAAAGAATCCACTCTTCA 33594 Score = 113 bits (124), Expect = 1e-19 Identities = 145/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || ||| | || || ||||| || || | || || ||| || ||| Sbjct 33337 CAAATTTTCGTAAAGACTTTAACTGGTAAAACTATTACTTTAGAAGTTGAATCTTCTGAC 33278 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || ||||| ||||||||| || || ||||| || || || || || ||| Sbjct 33277 ACTATTGAAAATGTCAAGTCAAAGATTCAAGATAAGGAAGGTATTCCACCAGATCAACAA 33218 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || || || ||||| | ||||||||| | |||||| | || || || | Sbjct 33217 CGTTTAATTTTTGCTGGTAAACAATTAGAAGATGGACGTACTCTTTCTGACTACAATATT 33158 Query 178104 CAAAAAGAATCAACACTGCA 178123 ||||||||||| || || || Sbjct 33157 CAAAAAGAATCTACTCTTCA 33138 Score = 113 bits (124), Expect = 1e-19 Identities = 145/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || ||| | || || ||||| || || | || || ||| || ||| Sbjct 33565 CAAATTTTCGTAAAGACTTTAACTGGTAAAACTATTACTTTAGAAGTTGAATCTTCTGAC 33506 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || ||||| ||||||||| || || ||||| || || || || || ||| Sbjct 33505 ACTATTGAAAATGTCAAGTCAAAGATTCAAGATAAGGAAGGTATTCCACCAGATCAACAA 33446 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || || || ||||| | ||||||||| | |||||| | || || || | Sbjct 33445 CGTTTAATTTTTGCTGGTAAACAATTAGAAGATGGACGTACTCTTTCTGACTACAATATT 33386 Query 178104 CAAAAAGAATCAACACTGCA 178123 ||||||||||| || || || Sbjct 33385 CAAAAAGAATCCACTCTTCA 33366 >seq112 Length=1961624 Score = 104 bits (114), Expect = 6e-17 Identities = 132/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 177927 ATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACC 177986 |||||||| ||||| || || ||||| || || ||||| ||||| || || |||| Sbjct 1853610 ATTTTCGTCAAAACCCTTACTGGAAAGACTATAACCCTTGAGGTTGAGTCTTCCGACAGT 1853669 Query 177987 ATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGA 178046 || | || || || | |||||||| || || ||||| || || || ||||| ||||| Sbjct 1853670 ATTGTCAATGTTAAGAACAAGATTCAAGAAAAGGAAGGTATTCCACCAGACCAACAACGT 1853729 Query 178047 CTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAA 178106 | ||||||||||| ||||| | ||||| || |||||| | || || ||| | ||| Sbjct 1853730 TTAATCTTCGCCGGTAAACAATTAGAAGACAACAGAACTCTTTCTGACTACAACATTCAA 1853789 Query 178107 AA 178108 || Sbjct 1853790 AA 1853791 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203727621909008