Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Piromyces_20sp._20E2_20[genbank_20GCA_5F002157105.1_202017-05-24] 1,656 sequences; 71,019,055 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq187 105 5e-18 seq579 93.3 3e-14 >seq187 Length=118869 Score = 105 bits (116), Expect = 5e-18 Identities = 174/250 (70%), Gaps = 1/250 (0%) Strand=Plus/Plus Query 25013 ATTTATAAGTAATAGT-GTAAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCA 25071 ||||| || |||||| || | |||||||| ||| ||||||| | ||||| || |||| Sbjct 40940 ATTTAAAATAAATAGTAGTTGAGATGCAAATCTTCGTCAAAACCCTTACGGGTAAGACCA 40999 Query 25072 TTACCGCCGAAACGGAACCCGCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATA 25131 ||||| || ||| || | || || | | || |||| || || |||| Sbjct 41000 TTACCCTTGAGGTCGAATCCTCCGACACTATCGAAAATGTCAAAGCTAAGATCCAAGATA 41059 Query 25132 AAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATT 25191 | |||||| | || ||| |||||| | ||||||||||| || || ||||| |||||| Sbjct 41060 AGGAAGGTATCCCACCAGACCAACAACGTCTTATCTTTGCCGGTAAGCAATTAGAAGATG 41119 Query 25192 CCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGAT 25251 ||| | | || ||||| || ||||||||||||||||| ||| | || | || | Sbjct 41120 GTCGTACTCTTTCTGACTACAACATCCAAAAGGAATCTACTCTCCACCTTGTTCTTCGTT 41179 Query 25252 TACGAGGAGG 25261 |||| || || Sbjct 41180 TACGTGGTGG 41189 >seq579 Length=22240 Score = 93.3 bits (102), Expect = 3e-14 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 25119 AAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAA 25178 |||||| |||||||||||| | || ||| |||||| | ||||| || || || ||| Sbjct 1069 AAAATTCAAGATAAAGAAGGTATTCCACCAGACCAACAACGTCTTATTTTCGCTGGTAAA 1010 Query 25179 CAATTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCAC 25238 ||||| |||||| ||| | | |||||||| ||||||||||||||||| ||||| Sbjct 1009 CAATTAGAAGATGGTCGTACTCTTTCTGATTACAACATTCAAAAGGAATCTACACTTCAT 950 Query 25239 ATGGTGTTACG 25249 | || ||||| Sbjct 949 TTAGTCTTACG 939 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 25119 AAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAA 25178 |||||| |||||||||||| | || ||||||||| | ||||| || || || ||| Sbjct 1297 AAAATTCAAGATAAAGAAGGTATTCCACCTGATCAACAACGTCTTATTTTCGCTGGTAAA 1238 Query 25179 CAATTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCAC 25238 ||||| |||||| ||| | | |||||||| || |||||||||||||| |||||| Sbjct 1237 CAATTAGAAGATGGTCGTACTCTTTCTGATTACAACATCCAAAAGGAATCTACCCTTCAC 1178 Query 25239 ATGGTGTTACGATTACGAGGAGG 25261 | || | || ||||| || || Sbjct 1177 TTAGTTCTTCGTTTACGTGGTGG 1155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410788509093584