Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Piromyces_20sp._20E2_20[genbank_20GCA_5F002157105.1_202017-05-24] 1,656 sequences; 71,019,055 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq579 178 2e-39 seq151 129 9e-25 seq301 93.3 6e-14 >seq579 Length=22240 Score = 178 bits (196), Expect = 2e-39 Identities = 178/231 (77%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| ||| ||||||| || || || || ||||| ||| | || ||||| | Sbjct 1382 AATGCAAATCTTTGTAAAGACTCTTACTGGTAAGACTATCACTCTTGAAGTTGAATCTTC 1323 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||||| ||| ||| | ||| ||||||||||||||||||||||| ||||||||||| Sbjct 1322 TGATACTATTGAAAATGTTAAAGCCAAAATTCAAGATAAAGAAGGTATTCCACCTGATCA 1263 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||| | |||||||| || || ||||||||||| ||| |||| || | ||||| || Sbjct 1262 ACAACGTCTTATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTTTCTGATTACAA 1203 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||| ||||| || | || || ||| | |||||||| |||||||| Sbjct 1202 CATCCAAAAGGAATCTACCCTTCACTTAGTTCTTCGTTTACGTGGTGGTAT 1152 Score = 161 bits (178), Expect = 1e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | || || |||| || |||||||| ||| |||| | ||| | | Sbjct 1153 ATGCAAATCTTTGTTAAAACTTTAACTGGTAAAACTATCACTTTAGAAGTAGAATCTTCT 1094 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| ||| | ||| ||||||||||||||||||||||| ||||| || ||| Sbjct 1093 GATACCATTGAAAATGTTAAAGCCAAAATTCAAGATAAAGAAGGTATTCCACCAGACCAA 1034 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | |||||||| || || ||||||||||| ||| |||| || | ||||| || Sbjct 1033 CAACGTCTTATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTTTCTGATTACAAC 974 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765 |||||||| ||||| || | ||||| || |||||| | || ||||| Sbjct 973 ATTCAAAAGGAATCTACACTTCATTTAGTCTTACGTCTTCGTGGTGG 927 >seq151 Length=136619 Score = 129 bits (142), Expect = 9e-25 Identities = 187/264 (71%), Gaps = 0/264 (0%) Strand=Plus/Minus Query 205708 GTATAATTTGTATCCATATCAATATATTTAGCACCAAAATGACGCCATTGAAAACCATAA 205767 ||||||| ||||| ||| | |||||| ||||| |||||||||||||| ||||||| Sbjct 132727 GTATAATCTGTATGACAATCTACATATTTTGCACCGAAATGACGCCATTGCCAACCATAT 132668 Query 205768 ACTGGACCTAAATCACCTTCTTTTCTATCATTAAAACCACGtttttttatatattttaat 205827 | |||||||||||||||||| | ||| ||| | |||||| ||| | | | ||| Sbjct 132667 ATTGGACCTAAATCACCTTCCTCTCTTTCAGTCAAACCAATTTTATCAAGAAATTCACGA 132608 Query 205828 gatccattttcatcccaaatatggattcctttattttttaGAATATTTGTATTAGTTGAT 205887 || |||||| | |||||||| | | ||||| ||| || || |||| || || Sbjct 132607 GAACCATTTCCTTCCCAAATTTTAACACCTTTTTTTGATAATATTTTTGAATCTGTATCA 132548 Query 205888 CCAGATATAAACCATAATAATTCTTCAACAATTCCTCTCCAAAACATTGATTTTGTTGTA 205947 || |||||||| || |||||||| | | ||||| |||| | | || ||||| Sbjct 132547 CCCCTGATAAACCAAAACAATTCTTCTGCTACACCTCTGAAAAATACTTTCTTAGTTGTT 132488 Query 205948 AATAATGGAAATGAATCATCTAAT 205971 ||||| ||||| ||| | |||| Sbjct 132487 AATAAAGGAAAATGATCTTTTAAT 132464 >seq301 Length=77503 Score = 93.3 bits (102), Expect = 6e-14 Identities = 124/171 (73%), Gaps = 1/171 (1%) Strand=Plus/Plus Query 124596 AATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGAT 124655 |||||||||||| ||| ||||| | |||||||||||| |||||| || || | |||| Sbjct 368 AATGATACAATTGAAAATATAAAAAA-AAAATTCAAGATTTAGAAGGGATTCCTCTTGAT 426 Query 124656 CAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTAT 124715 ||| ||| | || || || || ||||||||| || || || | | ||||||| Sbjct 427 CAAATAAGATTAATATTCGCTGGCAAACAATTATGTAATGGTAAAAAACTTTCAGATTAT 486 Query 124716 AATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766 || ||| ||| ||||||||| | ||| | ||| | ||| |||||||| Sbjct 487 AAGATTATAAATGAATCAACTCTTCATATTGTTGAAAAATTAAGAGGTGGT 537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755440362060800