Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Piromyces_20sp._20E2_20[genbank_20GCA_5F002157105.1_202017-05-24] 1,656 sequences; 71,019,055 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq579 127 3e-24 seq301 84.2 3e-11 >seq579 Length=22240 Score = 127 bits (140), Expect = 3e-24 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCT 146107 ||||||| | ||| | ||| || ||||| | |||||||| ||| || || || ||||| Sbjct 925 TTCCACCACGAAGACGTAAGACTAAATGAAGTGTAGATTCCTTTTGA-ATGTTGTAATCA 983 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 |||||||| | | ||| ||||||||||| ||||| ||||| | | ||| || || || Sbjct 984 GAAAGAGTACGACCATCTTCTAATTGTTTACCAGCGAAAATAAGACGTTGTTGGTCTGGT 1043 Query 146168 GGAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCT 146227 ||||| |||||||||||||| ||||| ||| |||| Sbjct 1044 GGAATACCTTCTTTATCTTGAATTTTGGCTTTAACATTTTCAATGGTATCAGAAGATTCT 1103 Query 146228 ACTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 ||||||| ||||| |||||||| ||||| ||||||| || |||||||| Sbjct 1104 ACTTCTAAAGTGATAGTTTTACCAGTTAAAGTTTTAACAAAGATTTGCAT 1153 Score = 95.1 bits (104), Expect = 2e-14 Identities = 136/200 (68%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 146081 GTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCA 146140 |||||||| || || || ||||| |||||||| | | ||| ||||||||||| ||| Sbjct 1185 GTAGATTCCTTTTGGATGTTGTAATCAGAAAGAGTACGACCATCTTCTAATTGTTTACCA 1244 Query 146141 GCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTGNNNNNNNNNNNNN 146200 || ||||| | | ||| ||||| || ||||| |||||||||||||| Sbjct 1245 GCGAAAATAAGACGTTGTTGATCAGGTGGAATACCTTCTTTATCTTGAATTTTGGCTTTA 1304 Query 146201 NNNNNNNNNNNAGTATCTGAACTTTCTACTTCTAGTGTGATTGTTTTACCTGTTAATGTT 146260 |||||| ||| ||| ||||| || ||||| || ||||| || | || Sbjct 1305 ACATTTTCAATAGTATCAGAAGATTCAACTTCAAGAGTGATAGTCTTACCAGTAAGAGTC 1364 Query 146261 TTAATGAATATTTGCATTTT 146280 || | || ||||||||||| Sbjct 1365 TTTACAAAGATTTGCATTTT 1384 >seq301 Length=77503 Score = 84.2 bits (92), Expect = 3e-11 Identities = 103/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 |||||||| | | || || | ||| | ||| ||||| |||| | || ||||||||||| Sbjct 536 CCACCTCTTAATTTTTCAACAATATGAAGAGTTGATTCATTTATA-ATCTTATAATCTGA 478 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 ||| || | | || | ||||||||| ||||| || || |||||| ||||| |||| Sbjct 477 AAGTTTTTTACCATTACATAATTGTTTGCCAGCGAATATTAATCTTATTTGATCAAGAGG 418 Query 146170 AATTCCTTCTTTATCTTG 146187 ||| |||||| |||||| Sbjct 417 AATCCCTTCTAAATCTTG 400 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743511009003520