Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Piromyces_20sp._20E2_20[genbank_20GCA_5F002157105.1_202017-05-24] 1,656 sequences; 71,019,055 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq579 96.9 3e-15 seq187 89.7 4e-13 >seq579 Length=22240 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || |||| | ||| || | |||||| || ||||| ||||| |||||||| || | Sbjct 1155 CCACCACGTAAACGAAGAACTAAGTGAAGGGTAGATTCCTTTTGGATGTTGTAATCAGAA 1214 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || || |||||| |||||||| || || | ||||| | ||||||||| || Sbjct 1215 AGAGTACGACCATCTTCTAATTGTTTACCAGCGAAAATAAGACGTTGTTGATCAGGTGGA 1274 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACC-TGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||| ||||| ||||| | |||| | | | | ||| ||| ||| | || Sbjct 1275 ATACCTTCTTTATCTTGAATTT-TGGCTTTAACATTTTCAATAGTATCAGAAGATTCAAC 1333 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTT 18329 ||||| ||||| | || || || | || |||||||| |||||||||||| Sbjct 1334 TTCAAGAGTGATAGTCTTACCAGTAAGAGTCTTTACAAAGATTTGCATTTTT 1385 Score = 87.8 bits (96), Expect = 1e-12 Identities = 166/238 (70%), Gaps = 5/238 (2%) Strand=Plus/Plus Query 18090 TTTTGTTATCCTCCCCGTAGTC-TAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTT 18148 ||| ||| ||| || || || | |||| || | |||||||| ||||| ||||||||||| Sbjct 919 TTTAGTT-TCCACCACGAAGACGTAAG-ACTAAATGAAGTGTAGATTCCTTTTGAATGTT 976 Query 18149 GTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTG 18208 ||| || | | || || |||||| |||||||| || || | ||||| | |||||| Sbjct 977 GTAATCAGAAAGAGTACGACCATCTTCTAATTGTTTACCAGCGAAAATAAGACGTTGTTG 1036 Query 18209 ATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCAC 18267 || || | ||||| ||||| ||||| | || || || | | ||| || ||| Sbjct 1037 GTCTGGTGGAATACCTTCTTTATCTTGAATTT-TGGCTTTAACATTTTCAATGGTATCAG 1095 Query 18268 CGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 | || ||| | ||||| |||| || || || ||||| ||||| |||||||| Sbjct 1096 AAGATTCTACTTCTAAAGTGATAGTTTTACCAGTTAAAGTTTTAACAAAGATTTGCAT 1153 >seq187 Length=118869 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || |||| | ||| || | ||| || || ||||| ||||| ||||||||||| | Sbjct 41189 CCACCACGTAAACGAAGAACAAGGTGGAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAA 41130 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || || |||||| ||||| || || ||| ||||||| | |||||| || || Sbjct 41129 AGAGTACGACCATCTTCTAATTGCTTACCGGCAAAGATAAGACGTTGTTGGTCTGGTGGG 41070 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||||||||| || | | || ||||| | | | | |||||| || ||| Sbjct 41069 ATACCTTCCTTATCTTGGATCT-TAGCTTTGACATTTTCGATAGTGTCGGAGGATTCGAC 41011 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| ||| ||| | || || || | ||||| || || |||||||| Sbjct 41010 CTCAAGGGTAATGGTCTTACCCGTAAGGGTTTTGACGAAGATTTGCAT 40963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379336343889720