Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Piromyces_20sp._20E2_20[genbank_20GCA_5F002157105.1_202017-05-24] 1,656 sequences; 71,019,055 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq579 165 6e-36 seq45 96.9 3e-15 seq187 91.5 1e-13 seq97 86.0 5e-12 >seq579 Length=22240 Score = 165 bits (182), Expect = 6e-36 Identities = 165/214 (77%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 15151 TAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTC 15210 ||| ||||||||||| || || || ||||| ||||||||||| ||| | | | || Sbjct 941 TAAGACTAAATGAAGTGTAGATTCCTTTTGAATGTTGTAATCAGAAAGAGTACGACCATC 1000 Query 15211 TTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTC 15270 |||||||||||| |||||| | || | |||||||||||| |||||| |||||||| || Sbjct 1001 TTCTAATTGTTTACCAGCGAAAATAAGACGTTGTTGGTCTGGTGGAATACCTTCTTTATC 1060 Query 15271 ACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGT 15330 ||||||| || ||| |||| |||||||| | |||||| ||||| || || || Sbjct 1061 TTGAATTTTGGCTTTAACATTTTCAATGGTATCAGAAGATTCTACTTCTAAAGTGATAGT 1120 Query 15331 TTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 |||||| || | |||||| ||||| ||||||||| Sbjct 1121 TTTACCAGTTAAAGTTTTAACAAAGATTTGCATA 1154 Score = 143 bits (158), Expect = 2e-29 Identities = 160/214 (75%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 |||||| |||||||| || || ||||| ||||||||||| ||| | | | ||||| Sbjct 1172 AACTAAGTGAAGGGTAGATTCCTTTTGGATGTTGTAATCAGAAAGAGTACGACCATCTTC 1231 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 ||||||||| |||||| | || | ||||||||| || |||||| |||||||| || Sbjct 1232 TAATTGTTTACCAGCGAAAATAAGACGTTGTTGATCAGGTGGAATACCTTCTTTATCTTG 1291 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 ||||||| || ||| |||| || ||||| | ||| || || | || || || || Sbjct 1292 AATTTTGGCTTTAACATTTTCAATAGTATCAGAAGATTCAACTTCAAGAGTGATAGTCTT 1351 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATATTT 15367 ||| || ||||| |||||||| |||||||| ||| Sbjct 1352 ACCAGTAAGAGTCTTTACAAAGATTTGCATTTTT 1385 >seq45 Length=243278 Score = 96.9 bits (106), Expect = 3e-15 Identities = 154/217 (71%), Gaps = 3/217 (1%) Strand=Plus/Plus Query 15176 TTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATC 15235 ||||| |||||||| || ||| | | | ||||||||||| || |||||| | || Sbjct 63453 TTTTGGATGTTGTAGTCAGAGAGAGTACGGTCATCTTCTAATTGCTTACCAGCGAAGATT 63512 Query 15236 AAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCT 15295 ||||||||||| || |||||| ||||| || || || ||| |||||||| | | Sbjct 63513 AAACGTTGTTGATCTGGTGGAATACCTTCCTTTTCTTGGATCTTGTTCTTTACATTAACA 63572 Query 15296 ATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAA 15355 ||| | ||| | ||| || || | ||| || || || || || || || ||||||||| Sbjct 63573 ATGCTGTCGGAAGATTCAACCTCAAGGGTGATAGTCTTTCCGGTAAGGGTCTTTACAAAA 63632 Query 15356 AT-TTGCATATTTGAAAATAAAATT-TTAATACTTAT 15390 || | ||||| | ||||| ||| ||||| |||| Sbjct 63633 ATCTATTTTATTTCATAATAATATTGATAATA-TTAT 63668 >seq187 Length=118869 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 || || || || || ||||| |||||||| || ||| | | | ||||||||||| Sbjct 41165 TGGAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAAAGAGTACGACCATCTTCTAATTGC 41106 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-TTT 15279 || || || | || | |||||||||||| ||| || ||||| || || || || Sbjct 41105 TTACCGGCAAAGATAAGACGTTGTTGGTCTGGTGGGATACCTTCCTTATCTTGGATCTTA 41046 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 ||| || ||| |||| || || ||| ||| || || | ||||||||| ||||| || Sbjct 41045 GCT-TTGACATTTTCGATAGTGTCGGAGGATTCGACCTCAAGGGTAATGGTCTTACCCGT 40987 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 || ||||| || || |||||||| Sbjct 40986 AAGGGTTTTGACGAAGATTTGCAT 40963 >seq97 Length=178188 Score = 86.0 bits (94), Expect = 5e-12 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 15176 TTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATC 15235 ||||| |||||||| || || |||| | |||||||||||||| || ||| | || Sbjct 109207 TTTTGGATGTTGTAGTCAGAAAGGGTTCTGTCATCTTCTAATTGTTTACCGGCGAAAATT 109148 Query 15236 AAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCT 15295 |||||||||||||| ||| || ||||| || || ||| ||| |||| ||| | | Sbjct 109147 AAACGTTGTTGGTCTGGTGGGATACCTTCCTTTTCTTGAATCTTGTTCTTAACATTGACA 109088 Query 15296 ATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAA 15355 || | ||| | || || || | ||| || || || || || || ||||| || ||| Sbjct 109087 ATACTGTCGGAAGACTCAACCTCAAGGGTTATAGTCTTTCCAGTAAGGGTTTTGACGAAA 109028 Query 15356 AT 15357 || Sbjct 109027 AT 109026 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362171890318296