Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Piromyces_20sp._20E2_20[genbank_20GCA_5F002157105.1_202017-05-24] 1,656 sequences; 71,019,055 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq579 183 7e-41 >seq579 Length=22240 Score = 183 bits (202), Expect = 7e-41 Identities = 170/216 (79%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| |||| || | |||||||| || || || || || ||||| ||||| | ||| || Sbjct 1169 AAGAACTAAGTGAAGGGTAGATTCCTTTTGGATGTTGTAATCAGAAAGAGTACGACCATC 1228 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||||| |||||| ||||| ||||| || | ||||||||||| || || ||||||||||| Sbjct 1229 TTCTAATTGTTTACCAGCGAAAATAAGACGTTGTTGATCAGGTGGAATACCTTCTTTATC 1288 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||||| || ||||| |||||||| | ||||| || ||| || || || || ||||| Sbjct 1289 TTGAATTTTGGCTTTAACATTTTCAATAGTATCAGAAGATTCAACTTCAAGAGTGATAGT 1348 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 |||||||||||| || |||||||| || |||||||| Sbjct 1349 CTTACCAGTAAGAGTCTTTACAAAGATTTGCATTTT 1384 Score = 179 bits (198), Expect = 9e-40 Identities = 186/240 (78%), Gaps = 4/240 (2%) Strand=Plus/Plus Query 104323 TTTATTTA--TTCCCCCTCTTAGCC-TAAGTACTAGATGTAATGTAGATTCTTTCTGAAT 104379 |||||||| |||| || | || | |||| |||| ||| | ||||||||| || ||||| Sbjct 915 TTTATTTAGTTTCCACCACGAAGACGTAAG-ACTAAATGAAGTGTAGATTCCTTTTGAAT 973 Query 104380 ATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTG 104439 || || ||||| ||||| | ||| ||||||| |||||| ||||| ||||| || | || Sbjct 974 GTTGTAATCAGAAAGAGTACGACCATCTTCTAATTGTTTACCAGCGAAAATAAGACGTTG 1033 Query 104440 TTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATC 104499 ||| || || || || ||||||||||| ||||| || ||||| |||||||| | |||||| Sbjct 1034 TTGGTCTGGTGGAATACCTTCTTTATCTTGAATTTTGGCTTTAACATTTTCAATGGTATC 1093 Query 104500 GCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || |||||| |||| || ||||| |||||||| | ||||| ||||| || ||||| Sbjct 1094 AGAAGATTCTACTTCTAAAGTGATAGTTTTACCAGTTAAAGTTTTAACAAAGATTTGCAT 1153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151373970204448