Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Piromyces_20sp._20E2_20[genbank_20GCA_5F002157105.1_202017-05-24] 1,656 sequences; 71,019,055 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq579 96.9 3e-15 seq187 91.5 1e-13 >seq579 Length=22240 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCT 94856 || ||||| | |||||||||||||| | ||| ||||| | || || || ||| | Sbjct 1173 ACTAAGTGAAGGGTAGATTCCTTTTGGATGTTGTAATCAG--AAAGAGTACGACCATCTT 1230 Query 94857 CCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCAT 94916 | | ||||| || | || || | | ||| ||||| || |||||||||||||| || | Sbjct 1231 CTAATTGTTTACCAGCGAAAATAAGACGTTGTTGATCAGGTGGAATACCTTCTTTATCTT 1290 Query 94917 AAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTT 94976 |||||| || || || | | ||| |||| || || |||| ||||| || | Sbjct 1291 GAATTTTGGCTTTAACATTTTCAATAGTATCAGAAGATTCAACTTCAAGAGTGATAGTCT 1350 Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | ||||||||||| || |||||||| ||||| Sbjct 1351 TACCAGTAAGAGTCTTTACAAAGATTTGCAT 1381 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/217 (69%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA- 94851 || || || || || | |||||||||||||| | ||| ||||| | || || || Sbjct 939 CGTAAGACTAAATGAAGTGTAGATTCCTTTTGAATGTTGTAATCAG--AAAGAGTACGAC 996 Query 94852 -ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTT 94910 ||| || | ||||| || | || || | | ||| || ||||| ||||||||||||| Sbjct 997 CATCTTCTAATTGTTTACCAGCGAAAATAAGACGTTGTTGGTCTGGTGGAATACCTTCTT 1056 Query 94911 TGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGA 94970 | || | |||||| || || || | | || |||| || || || | |||| Sbjct 1057 TATCTTGAATTTTGGCTTTAACATTTTCAATGGTATCAGAAGATTCTACTTCTAAAGTGA 1116 Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | ||||| ||||| | |||||| |||||||| ||||| Sbjct 1117 TAGTTTTACCAGTTAAAGTTTTAACAAAGATTTGCAT 1153 >seq187 Length=118869 Score = 91.5 bits (100), Expect = 1e-13 Identities = 145/206 (70%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 94804 GTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGC 94861 ||| | ||||||||||||||| | ||| || | | | || || || ||| || | Sbjct 41166 GTGGAGAGTAGATTCCTTTTGGATGTTGTAGT--CAGAAAGAGTACGACCATCTTCTAAT 41109 Query 94862 TGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATT 94921 || || ||| ||||||| | | ||| || ||||| || |||||||| || || | || Sbjct 41108 TGCTTACCGGCAAAGATAAGACGTTGTTGGTCTGGTGGGATACCTTCCTTATCTTGGATC 41049 Query 94922 TTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCA 94981 || || ||||| ||| |||||| | | ||||| |||| || ||||| || || Sbjct 41048 TTAGCTTTGACATTTTCGATAGTGTCGGAGGATTCGACCTCAAGGGTAATGGTCTTACCC 40989 Query 94982 GTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| ||||| || ||||| ||||| Sbjct 40988 GTAAGGGTTTTGACGAAGATTTGCAT 40963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448281920372160