Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Piromyces_20sp._20E2_20[genbank_20GCA_5F002157105.1_202017-05-24] 1,656 sequences; 71,019,055 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq187 161 2e-34 seq579 158 2e-33 seq45 125 1e-23 seq97 120 6e-22 >seq187 Length=118869 Score = 161 bits (178), Expect = 2e-34 Identities = 158/204 (77%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 68258 GTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTG 68317 ||| || || || || ||||||||||| || || || || || | ||||||||||| || Sbjct 41166 GTGGAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAAAGAGTACGACCATCTTCTAATTG 41107 Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377 ||| ||||| || || || | ||||||||| ||||| || |||||||| ||||| ||||| Sbjct 41106 CTTACCGGCAAAGATAAGACGTTGTTGGTCTGGTGGGATACCTTCCTTATCTTGGATCTT 41047 Query 68378 TGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGT 68437 || ||||| ||||| ||||| | ||||| || || | ||| ||||| || ||||| Sbjct 41046 AGCTTTGACATTTTCGATAGTGTCGGAGGATTCGACCTCAAGGGTAATGGTCTTACCCGT 40987 Query 68438 GAGGGTCTTGACGAATATCTGCAT 68461 ||||| |||||||| || ||||| Sbjct 40986 AAGGGTTTTGACGAAGATTTGCAT 40963 >seq579 Length=22240 Score = 158 bits (174), Expect = 2e-33 Identities = 176/235 (75%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 68227 TTTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTAT 68286 |||| ||||| || ||||| || || || || || || || || || ||||| ||||| | Sbjct 919 TTTAGTTTCCACCACGAAGACGTAAGACTAAATGAAGTGTAGATTCCTTTTGAATGTTGT 978 Query 68287 AATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGT 68346 |||| || || || | ||||||||||| || || || ||||| || || | |||||||| Sbjct 979 AATCAGAAAGAGTACGACCATCTTCTAATTGTTTACCAGCGAAAATAAGACGTTGTTGGT 1038 Query 68347 CGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTG 68406 | |||||||| ||||| || |||||||| || || || || || ||||| || | | Sbjct 1039 CTGGTGGAATACCTTCTTTATCTTGAATTTTGGCTTTAACATTTTCAATGGTATCAGAAG 1098 Query 68407 ATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||||||| || ||||| ||||| || || | || || || || || ||||| Sbjct 1099 ATTCTACTTCTAAAGTGATAGTTTTACCAGTTAAAGTTTTAACAAAGATTTGCAT 1153 Score = 136 bits (150), Expect = 7e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 || ||||| || || || || ||||||||||| ||||| || || || | ||||||||| Sbjct 1173 ACTAAGTGAAGGGTAGATTCCTTTTGGATGTTGTAATCAGAAAGAGTACGACCATCTTCT 1232 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 || || || || ||||| || || | |||||| || |||||||| ||||| || |||||| Sbjct 1233 AATTGTTTACCAGCGAAAATAAGACGTTGTTGATCAGGTGGAATACCTTCTTTATCTTGA 1292 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 || || || || || || || || || | ||||| ||||| | ||||| || || Sbjct 1293 ATTTTGGCTTTAACATTTTCAATAGTATCAGAAGATTCAACTTCAAGAGTGATAGTCTTA 1352 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || || || ||||| || || || |||||| Sbjct 1353 CCAGTAAGAGTCTTTACAAAGATTTGCATT 1382 >seq45 Length=243278 Score = 125 bits (138), Expect = 1e-23 Identities = 138/184 (75%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333 ||||||||||| || || ||||| || | |||||||||| ||||| || ||||| || Sbjct 63453 TTTTGGATGTTGTAGTCAGAGAGAGTACGGTCATCTTCTAATTGCTTACCAGCGAAGATT 63512 Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393 | | |||||| || |||||||| |||||||| ||||| ||||| ||| || | Sbjct 63513 AAACGTTGTTGATCTGGTGGAATACCTTCCTTTTCTTGGATCTTGTTCTTTACATTAACA 63572 Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAAT 68453 ||| |||| | ||||| || || | |||||| || ||||| || |||||||| || || Sbjct 63573 ATGCTGTCGGAAGATTCAACCTCAAGGGTGATAGTCTTTCCGGTAAGGGTCTTTACAAAA 63632 Query 68454 ATCT 68457 |||| Sbjct 63633 ATCT 63636 >seq97 Length=178188 Score = 120 bits (132), Expect = 6e-22 Identities = 137/184 (74%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333 ||||||||||| || || || || || || |||||||||| || || |||||||| || Sbjct 109207 TTTTGGATGTTGTAGTCAGAAAGGGTTCTGTCATCTTCTAATTGTTTACCGGCGAAAATT 109148 Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393 | | ||||||||| ||||| || |||||||| ||||||||||| ||| || | Sbjct 109147 AAACGTTGTTGGTCTGGTGGGATACCTTCCTTTTCTTGAATCTTGTTCTTAACATTGACA 109088 Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAAT 68453 || |||| | || || || || | ||| || || ||||| || ||||| |||||||| Sbjct 109087 ATACTGTCGGAAGACTCAACCTCAAGGGTTATAGTCTTTCCAGTAAGGGTTTTGACGAAA 109028 Query 68454 ATCT 68457 |||| Sbjct 109027 ATCT 109024 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921603322416320