Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Piromyces_20sp._20E2_20[genbank_20GCA_5F002157105.1_202017-05-24] 1,656 sequences; 71,019,055 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq579 158 3e-33 seq187 131 4e-25 seq45 104 6e-17 >seq579 Length=22240 Score = 158 bits (174), Expect = 3e-33 Identities = 165/215 (77%), Gaps = 5/215 (2%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| |||||||| || || || | || || || || |||||||||||||| || ||||| Sbjct 1190 TTCCTTTTGGATGTTGTAATCAGAAAGAGTACGACCATCTTCTAATTGTTTACCAGCGAA 1249 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 || ||||| |||||| | ||| || ||||||||||| || ||||| ||||| || || Sbjct 1250 AATAAGACGTTGTTGATCAGGTGGAATACCTTCTTTATCTTGAATTTTGGCTTTAACATT 1309 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||| |||| ||| ||||| ||||| || ||||| ||||| || || |||||||| || Sbjct 1310 TTCAATAGTATCAGAAGATTCAACTTCAAGAGTGATAGTCTTACCAGTAAGAGTCTTTAC 1369 Query 288462 GAATATCTGCATTATGTTATTCTAATATTTTTAAT 288496 || || |||||| | ||||| |||||||||| Sbjct 1370 AAAGATTTGCATT-TTTTATT----TATTTTTAAT 1399 Score = 122 bits (134), Expect = 2e-22 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTC-TAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGG 288304 |||||| || || | |||| || | ||||| || ||| ||||| || || || || | Sbjct 926 TCCACCACGAAGACGTAAG-ACTAAATGAAGTGTAGATTCCTTTTGAATGTTGTAATCAG 984 Query 288305 CGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTG 288364 || || || || |||||||||||||| || ||||| || ||||| ||||| || Sbjct 985 AAAGAGTACGACCATCTTCTAATTGTTTACCAGCGAAAATAAGACGTTGTTGGTCTGGTG 1044 Query 288365 GGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTA 288424 | || ||||||||||| || ||||| ||||| || ||||| || | ||| ||||||| Sbjct 1045 GAATACCTTCTTTATCTTGAATTTTGGCTTTAACATTTTCAATGGTATCAGAAGATTCTA 1104 Query 288425 CTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 |||| | ||||| || || || || | ||| || || || || ||||| Sbjct 1105 CTTCTAAAGTGATAGTTTTACCAGTTAAAGTTTTAACAAAGATTTGCAT 1153 >seq187 Length=118869 Score = 131 bits (144), Expect = 4e-25 Identities = 144/192 (75%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| |||||||| || ||||| | || || || || ||||||||||| || || || || Sbjct 41154 TTCCTTTTGGATGTTGTAGTCAGAAAGAGTACGACCATCTTCTAATTGCTTACCGGCAAA 41095 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 ||| ||||| ||||| |||||| ||||| ||||| ||||| || ||||| || || Sbjct 41094 GATAAGACGTTGTTGGTCTGGTGGGATACCTTCCTTATCTTGGATCTTAGCTTTGACATT 41035 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||| |||| ||| ||||| || || || || || ||||| || || || || ||||| Sbjct 41034 TTCGATAGTGTCGGAGGATTCGACCTCAAGGGTAATGGTCTTACCCGTAAGGGTTTTGAC 40975 Query 288462 GAATATCTGCAT 288473 ||| || ||||| Sbjct 40974 GAAGATTTGCAT 40963 >seq45 Length=243278 Score = 104 bits (114), Expect = 6e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 |||||||| || ||||| | ||| || || | ||||||||||| || || |||||||| Sbjct 63453 TTTTGGATGTTGTAGTCAGAGAGAGTACGGTCATCTTCTAATTGCTTACCAGCGAAGATT 63512 Query 288346 AGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCT 288405 | ||| |||||| ||| || ||||| || || ||||| || || || || | Sbjct 63513 AAACGTTGTTGATCTGGTGGAATACCTTCCTTTTCTTGGATCTTGTTCTTTACATTAACA 63572 Query 288406 ATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAAT 288465 || ||| ||||| || || || ||||| ||||| ||||| || ||||| || || Sbjct 63573 ATGCTGTCGGAAGATTCAACCTCAAGGGTGATAGTCTTTCCGGTAAGGGTCTTTACAAAA 63632 Query 288466 ATCTGCATTATGTTATTCTAATATTTTTAATA 288497 |||| |||| | || ||||||| ||||| Sbjct 63633 ATCTATTTTATTTCATAATAATATTGATAATA 63664 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179629370682768