Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Piromyces_20sp._20E2_20[genbank_20GCA_5F002157105.1_202017-05-24] 1,656 sequences; 71,019,055 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq579 95.1 1e-14 seq187 84.2 2e-11 >seq579 Length=22240 Score = 95.1 bits (104), Expect = 1e-14 Identities = 176/255 (69%), Gaps = 5/255 (2%) Strand=Plus/Plus Query 41958 ATATTAT---ATATATTAATTTATCGACCTCCTCTTAAACGCAACACCAAATGCAATGTG 42014 ||||||| || |||| ||||| || || | | ||| || || ||||| | ||| Sbjct 900 ATATTATGTTATTTATTTATTTAGTTTCCACCACGAAGACGTAAGACTAAATGAAGTGTA 959 Query 42015 CTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCG 42074 ||||||||||| |||||||||| ||||| || | || |||| || ||||||||| Sbjct 960 GATTCCTTTTGAATGTTGTAATCAGAAAGAGTACGACCATCTTCTAATTGTTTACCAGCG 1019 Query 42075 AATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAG 42133 || || || || || ||||| | ||| | | || ||| | ||| |||| | ||| | Sbjct 1020 AAAATAAGACGTTGTTGGTCTGGTGGAATAC-CTTCTTTATCTTGAATTTTGGCTTTAAC 1078 Query 42134 CGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 42193 | | | || || ||||| || || | ||||| ||||| || |||| || || Sbjct 1079 ATTTTCAATGGTATCAGAAGATTCTACTTCTAAAGTGATAGTTTTACCAGTTAAAGTTTT 1138 Query 42194 TACAAAGATTTGCAT 42208 |||||||||||||| Sbjct 1139 AACAAAGATTTGCAT 1153 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 |||||||| || |||||||||| ||||| || | || |||| || ||||||||||| Sbjct 1191 TCCTTTTGGATGTTGTAATCAGAAAGAGTACGACCATCTTCTAATTGTTTACCAGCGAAA 1250 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 42136 || || || || || || | ||| | | || ||| | ||| |||| | ||| | | Sbjct 1251 ATAAGACGTTGTTGATCAGGTGGAATAC-CTTCTTTATCTTGAATTTTGGCTTTAACATT 1309 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | || || ||||| || || | ||||| || || || || || |||||||| Sbjct 1310 TTCAATAGTATCAGAAGATTCAACTTCAAGAGTGATAGTCTTACCAGTAAGAGTCTTTAC 1369 Query 42197 AAAGATTTGCATTTT 42211 ||||||||||||||| Sbjct 1370 AAAGATTTGCATTTT 1384 >seq187 Length=118869 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 |||||||| || ||||| |||| ||||| || | || |||| |||||||| || || Sbjct 41153 TCCTTTTGGATGTTGTAGTCAGAAAGAGTACGACCATCTTCTAATTGCTTACCGGCAAAG 41094 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 || || || || ||||| | ||| | | ||||| || ||| || ||||| | Sbjct 41093 ATAAGACGTTGTTGGTCTGGTGGGATACCTTCCTTATCTTGGATCTTAGCTTTGACATTT 41034 Query 42138 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 42197 | | |||||| ||||| || || | || ||||| || ||||| || || || || Sbjct 41033 TCGATAGTGTCGGAGGATTCGACCTCAAGGGTAATGGTCTTACCCGTAAGGGTTTTGACG 40974 Query 42198 AAGATTTGCAT 42208 ||||||||||| Sbjct 40973 AAGATTTGCAT 40963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543201555495040