Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Piromyces_20sp._20E2_20[genbank_20GCA_5F002157105.1_202017-05-24] 1,656 sequences; 71,019,055 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq579 163 2e-35 seq187 104 2e-17 seq45 89.7 4e-13 seq97 86.0 4e-12 >seq579 Length=22240 Score = 163 bits (180), Expect = 2e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | | ||| ||||||||||| ||||| || ||||| ||||||||||| Sbjct 927 CCACCACGAAGACGTAAGACTAAATGAAGTGTAGATTCCTTTTGAATGTTGTAATCAGAA 986 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| | | | |||||||||||||| |||||| | || | ||| |||||||| |||| Sbjct 987 AGAGTACGACCATCTTCTAATTGTTTACCAGCGAAAATAAGACGTTGTTGGTCTGGTGGA 1046 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||| || || ||||||| ||| ||| |||| || ||||| | |||||| Sbjct 1047 ATACCTTCTTTATCTTGAATTTTGGCTTTAACATTTTCAATGGTATCAGAAGATTCTACT 1106 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 ||||| || || |||||||| || | |||||| ||||| ||||||||| Sbjct 1107 TCTAAAGTGATAGTTTTACCAGTTAAAGTTTTAACAAAGATTTGCATA 1154 Score = 152 bits (168), Expect = 4e-32 Identities = 183/248 (74%), Gaps = 3/248 (1%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || || | | |||||| ||||||||||| || ||||| ||||||||||| Sbjct 1155 CCACCACGTAAACGAAGAACTAAGTGAAGGGTAGATTCCTTTTGGATGTTGTAATCAGAA 1214 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| | | | |||||||||||||| |||||| | || | ||| ||||| || |||| Sbjct 1215 AGAGTACGACCATCTTCTAATTGTTTACCAGCGAAAATAAGACGTTGTTGATCAGGTGGA 1274 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||| || || ||||||| ||| ||| |||| |||||||| | ||| || Sbjct 1275 ATACCTTCTTTATCTTGAATTTTGGCTTTAACATTTTCAATAGTATCAGAAGATTCAACT 1334 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAATAAAT 15189 || | || || || ||||| || ||||| |||||||| |||||||| ||| | || Sbjct 1335 TCAAGAGTGATAGTCTTACCAGTAAGAGTCTTTACAAAGATTTGCATTTTTTATTTA--- 1391 Query 15190 TTTTTAAT 15197 |||||||| Sbjct 1392 TTTTTAAT 1399 >seq187 Length=118869 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || || | | ||| | || || ||||| || ||||| |||||||| || Sbjct 41189 CCACCACGTAAACGAAGAACAAGGTGGAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAA 41130 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| | | | ||||||||||| || || || | || | ||| |||||||| ||| Sbjct 41129 AGAGTACGACCATCTTCTAATTGCTTACCGGCAAAGATAAGACGTTGTTGGTCTGGTGGG 41070 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || |||||||| || || || ||| ||| |||| ||||| ||| ||| || Sbjct 41069 ATACCTTCCTTATCTTGGATCTTAGCTTTGACATTTTCGATAGTGTCGGAGGATTCGACC 41010 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | ||||||||| ||||| || || ||||| || || |||||||| Sbjct 41009 TCAAGGGTAATGGTCTTACCCGTAAGGGTTTTGACGAAGATTTGCAT 40963 >seq45 Length=243278 Score = 89.7 bits (98), Expect = 4e-13 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 14989 TTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATC 15048 ||||| |||||||| || |||| | | | ||||||||||| || |||||| | || Sbjct 63453 TTTTGGATGTTGTAGTCAGAGAGAGTACGGTCATCTTCTAATTGCTTACCAGCGAAGATT 63512 Query 15049 AAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCT 15108 ||||| ||||| || |||||| |||||||| || || ||| | |||||| | | Sbjct 63513 AAACGTTGTTGATCTGGTGGAATACCTTCCTTTTCTTGGATCTTGTTCTTTACATTAACA 63572 Query 15109 ATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAA 15168 || | ||| | ||| || || | ||| || || || || || || || ||||||||| Sbjct 63573 ATGCTGTCGGAAGATTCAACCTCAAGGGTGATAGTCTTTCCGGTAAGGGTCTTTACAAAA 63632 Query 15169 AT 15170 || Sbjct 63633 AT 63634 >seq97 Length=178188 Score = 86.0 bits (94), Expect = 4e-12 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 14989 TTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATC 15048 ||||| |||||||| || || |||| | |||||||||||||| || ||| | || Sbjct 109207 TTTTGGATGTTGTAGTCAGAAAGGGTTCTGTCATCTTCTAATTGTTTACCGGCGAAAATT 109148 Query 15049 AAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCT 15108 ||||| |||||||| ||| || |||||||| || ||| ||| | || ||| | | Sbjct 109147 AAACGTTGTTGGTCTGGTGGGATACCTTCCTTTTCTTGAATCTTGTTCTTAACATTGACA 109088 Query 15109 ATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAA 15168 ||| | ||| | || || || | ||| || || || || || || ||||| || ||| Sbjct 109087 ATACTGTCGGAAGACTCAACCTCAAGGGTTATAGTCTTTCCAGTAAGGGTTTTGACGAAA 109028 Query 15169 AT 15170 || Sbjct 109027 AT 109026 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357384786935960