Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Piromyces_20sp._20E2_20[genbank_20GCA_5F002157105.1_202017-05-24] 1,656 sequences; 71,019,055 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq579 134 1e-26 seq187 95.1 1e-14 seq97 82.4 7e-11 >seq579 Length=22240 Score = 134 bits (148), Expect = 1e-26 Identities = 174/239 (73%), Gaps = 1/239 (0%) Strand=Plus/Plus Query 45103 TTTATTTTATT-CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATA 45161 ||||||| || || || || || | || |||| ||| || || ||||||||||| || Sbjct 915 TTTATTTAGTTTCCACCACGAAGACGTAAGACTAAATGAAGTGTAGATTCCTTTTGAATG 974 Query 45162 TTATAATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGC 45221 || ||||| | || | ||| || |||||||| || ||| | || | ||||| Sbjct 975 TTGTAATCAGAAAGAGTACGACCATCTTCTAATTGTTTACCAGCGAAAATAAGACGTTGT 1034 Query 45222 TGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCG 45281 ||||| || ||||| |||||||||||||||||||| ||| | ||| | ||| || Sbjct 1035 TGGTCTGGTGGAATACCTTCTTTATCTTGAATTTTGGCTTTAACATTTTCAATGGTATCA 1094 Query 45282 GAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || ||||| | ||| | ||||| || |||| |||||| ||||| |||||||| Sbjct 1095 GAAGATTCTACTTCTAAAGTGATAGTTTTACCAGTTAAAGTTTTAACAAAGATTTGCAT 1153 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 |||| || || || |||||||||||||| || ||||| | || | ||| || Sbjct 1173 ACTAAGTGAAGGGTAGATTCCTTTTGGATGTTGTAATCAGAAAGAGTACGACCATCTTCT 1232 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 |||||||| || ||| | || | ||||| || || || ||||| ||||||||||||||| Sbjct 1233 AATTGTTTACCAGCGAAAATAAGACGTTGTTGATCAGGTGGAATACCTTCTTTATCTTGA 1292 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 ||||| ||| | ||| | || || ||||| || ||||| ||||| | || || Sbjct 1293 ATTTTGGCTTTAACATTTTCAATAGTATCAGAAGATTCAACTTCAAGAGTGATAGTCTTA 1352 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || ||||| |||||||| |||||||| Sbjct 1353 CCAGTAAGAGTCTTTACAAAGATTTGCAT 1381 >seq187 Length=118869 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || || || || || |||||||||||||| || || || | || | ||| || Sbjct 41171 ACAAGGTGGAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAAAGAGTACGACCATCTTCT 41112 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 ||||| || || || | || | ||||| ||||| || || || ||||| |||||||| Sbjct 41111 AATTGCTTACCGGCAAAGATAAGACGTTGTTGGTCTGGTGGGATACCTTCCTTATCTTGG 41052 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 || || ||||| ||| | |||||||| || ||||| || || |||| || || Sbjct 41051 ATCTTAGCTTTGACATTTTCGATAGTGTCGGAGGATTCGACCTCAAGGGTAATGGTCTTA 40992 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || || ||||| || || ||||||||| Sbjct 40991 CCCGTAAGGGTTTTGACGAAGATTTGCATC 40962 >seq97 Length=178188 Score = 82.4 bits (90), Expect = 7e-11 Identities = 131/186 (70%), Gaps = 4/186 (2%) Strand=Plus/Minus Query 45151 CCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATA 45210 |||||||||| || || || | |||| | ||| || |||||||| || ||| | | Sbjct 109209 CCTTTTGGATGTTGTAGTCAGAAAGGGTTCTGTCATCTTCTAATTGTTTACCGGCGAAAA 109150 Query 45211 TCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGA--TCGC 45268 | || ||||| ||||| || || || ||||| || |||||||| || | || | | | Sbjct 109149 TTAAACGTTGTTGGTCTGGTGGGATACCTTCCTTTTCTTGAATCTTGTTCTTAACATTGA 109090 Query 45269 TTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTAC 45328 ||| ||||||||||||| || || || || | || || || || || ||||| || Sbjct 109089 CAATAC--TGTCGGAAGACTCAACCTCAAGGGTTATAGTCTTTCCAGTAAGGGTTTTGAC 109032 Query 45329 AAAAAT 45334 ||||| Sbjct 109031 GAAAAT 109026 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451993843533760