Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Piromyces_20sp._20E2_20[genbank_20GCA_5F002157105.1_202017-05-24] 1,656 sequences; 71,019,055 total letters Query= NC_012663.1 Length=60074 Score E Sequences producing significant alignments: (Bits) Value seq400 100 1e-16 seq44 98.7 4e-16 >seq400 Length=54035 Score = 100 bits (110), Expect = 1e-16 Identities = 349/536 (65%), Gaps = 24/536 (4%) Strand=Plus/Plus Query 17970 ATTGTAGAACCAACCTCTGGTAATACTGGAATCGGTTTAGCTATGGTTGGAGCAGCTCTT 18029 ||||| |||||||| |||||||||||| ||||||||||| ||||| ||| Sbjct 35741 ATTGTTGAACCAACTAGTGGTAATACTGGTATCGGTTTAGCCTCAGTTGGTCGTGCTAAA 35800 Query 18030 GGACATCCAGTTACTATTGTAATGCCAGAATCATTCTCTATGGAACGTAGACAAATTATC 18089 ||| ||| |||| |||||| | ||||| | ||||| |||||| | || | || Sbjct 35801 GGATATCGTGTTATTATTGTTTTACCAGATAGTATGTCTATTGAACGTCGTAAACTCATT 35860 Query 18090 CGTGCTTATGGTGCTAACTTAGTTTTAACACCTGCTAGTGAAGGAATGAAAGGTGCTATC 18149 | | || ||||||| | |||||| | || || | | |||| ||| |||||||| | Sbjct 35861 CAAGGTTTTGGTGCTGAATTAGTTCTTACTCCAGGAAAACAAGGTATGCAAGGTGCTGTT 35920 Query 18150 GCTAAAGCCAAAGAAAT---TGCCAAAGATATTAACGGATTTATACCAATGCAATTTGAG 18206 | |||||| || ||||| |||| || || || | ||||| || |||||| | Sbjct 35921 GATAAAGCTAATGAAATTGCTGCCCAATATCCAAATGCTTTTATTCCTCAACAATTTAAT 35980 Query 18207 AACTTCTG-GAATCCTACAGCTCATTTTGA---TAACACAGCTTTTGAAATCATTG--AT 18260 || | | | ||| || ||| || ||| | || | | ||||| ||| || Sbjct 35981 AA-TCCAGCTAATGCT---GCTTATCATGAACGTGTTACCGGTGAAGAAAT--TTGGAAT 36034 Query 18261 GAACTTACTAAAAGTGGTAAACGTCCAGATATGTTTGTAGCAGGAGTTGGAACTGGTGGC 18320 || | || || || ||| | ||| ||||| || || ||||| |||||||| Sbjct 36035 GA---TGCTGAA---GGAAAAATT---GATTACTTTGTTGCTGGTGTTGGTACTGGTGGT 36085 Query 18321 ACTATTACTGGAGCAGGTCATTCACTCAAAGAAGAATTTCCTAGCATTAAAATTGTTGGA 18380 ||| || | || | ||| || | ||| || | ||| | || |||||||| | Sbjct 36086 ACTGTTTCAGGTGTTGGTGCCGCATTAAAAAAACATAATCCAAATATAAAAATTGTAGCT 36145 Query 18381 GTTGAATCAGCAGAATCACCAGTACTTAGTGGAGGAGAACCTGGACCACATAAGATTCAA 18440 || ||| || | || || ||| || | | || || |||| |||||||| |||||| Sbjct 36146 GTGGAACCATCTGATTCTCCATTATTATCTACTGGTAAAGCTGGTCCACATAAAATTCAA 36205 Query 18441 GGTATTTCAGCAGGTTTTATTCCACAAATTCTTGATATGGATATCATTGATGAAAT 18496 |||||| || |||| ||||| ||| | | || || || | |||||||| Sbjct 36206 GGTATTGGTGCCAATTTTGTTCCAAAAAATTATCATTCTGAAATTGTCGATGAAAT 36261 >seq44 Length=252503 Score = 98.7 bits (108), Expect = 4e-16 Identities = 432/671 (64%), Gaps = 36/671 (5%) Strand=Plus/Plus Query 17843 TGGAGATATTGCTGATGTTTATGTTAAACTAGAAAGCTTCAACCCTGGAGGTTCG---GT 17899 ||| | || ||| || ||| |||||||| ||| ||||||||| |||||| || Sbjct 204519 TGGTGGTAATGCCAATCTTTTAGTTAAACTTGAATACTTCAACCC---AGGTTCAAGTGT 204575 Query 17900 CAAAGACCGTATTGCTTTGAAAATGATTCAACAAGCACACAAGATTGGACAACTTAAAGA 17959 ||||| | |||||| | | ||| || | || | | | || ||||| Sbjct 204576 TAAAGATAGAATTGCTCTTGCTTTAATTGAAGATGCTGAACAAAAAGGTATTCTTAAGCC 204635 Query 17960 AGAACAAGCTATTGTAGAACCAACCTCTGGTAATACTGGAATCGGTTTAGCTATGGTTGG 18019 ||| || ||||| |||||||| |||||||||||| || ||||||||| ||||| Sbjct 204636 AGATTCAGTCATTGTTGAACCAACTAGTGGTAATACTGGTATTGGTTTAGCTTCTGTTGG 204695 Query 18020 AGCAGCTCTTGGACATCCAGTTACTATTGTAATGCCAGAATCATTCTCTATGGAACGTAG 18079 || || | | || | ||||| | ||||| | ||||| |||||| | Sbjct 204696 TCGTGCAAAGGGTTACCGTGTCATCATTGTTTTACCAGATAGTATGTCTATTGAACGTCG 204755 Query 18080 ACAAATTATCCGTGCTTATGGTGCTAACTTAGTTTTAACACCTGCTAGTGAAGGAATGAA 18139 | |||| | | || |||||| | |||||| | || || | | ||||| ||||| Sbjct 204756 TAAGCTTATTCAAGGTTTCGGTGCTGAATTAGTTCTTACTCCAGGAAAAGAAGGTATGAA 204815 Query 18140 AGGTGCTATCGCTAAAGCCAAAGAAAT---TGCCAAAGATATTAACGGATTTATACCAAT 18196 ||||||| | | ||||||||| ||||| ||| || || |||| ||||| ||| Sbjct 204816 AGGTGCTGTTGATAAAGCCAATGAAATTGCTGCTCAATATCCAAACGCCTTTATTCCACA 204875 Query 18197 GCAATTTGAGAACTTCTGGAATCCTACAGCTCATTTTGAT-AAC-----ACAGCTTTTGA 18250 |||||| | ||| | | ||| ||| || | || ||| || | | || Sbjct 204876 ACAATTTAACAAC-CCAG-----CTAACGCTGCTTATCATGAACGTGTTACTGGTGAAGA 204929 Query 18251 AATCATTG--ATGAACTTACTAAAAGTGGTAAACGTCCAGATATGTTTGTAGCAGGAGTT 18308 ||| ||| |||| | || || |||||| || ||| ||||| || || ||| Sbjct 204930 AAT--TTGGAATGA---TTCTGAA---GGTAAA-GT--TGATTATTTTGTTGCTGGTGTT 204978 Query 18309 GGAACTGGTGGCACTATTACTGGAGCAGGTCATTCACTCAAAGAAG-AATTTCCTAGCAT 18367 || |||||||| || | |||| | ||| | | || ||||||| | ||| | | Sbjct 204979 GGTACTGGTGGTACAGTCTCTGGTGTTGGTGCTGC-CTTAAAGAAGCACAATCCAAATGT 205037 Query 18368 TAAAATTGTTGGAGTTGAATCAGCAGAATCACCAGTACTTAGTGGAGGAGAACCTGGACC 18427 ||| ||||||| |||||| |||| || || ||| || | | || | |||| || Sbjct 205038 TAAGATTGTTGCCGTTGAACCAGCTGATTCTCCATTATTATCTACTGGTAAGGCTGGTCC 205097 Query 18428 ACATAAGATTCAAGGTATTTCAGCAGGTTTTATTCCACAAATTCTTGATATGGATATCAT 18487 ||| || |||||||||||| || ||| ||||||||| | || ||| | | Sbjct 205098 ACACAAAATTCAAGGTATTGGTGCTAACTTTGTTCCACAAAATTACCATGCTGATGTTGT 205157 Query 18488 TGATGAAATCA 18498 ||||||||||| Sbjct 205158 TGATGAAATCA 205168 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 192111422054592