Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Piromyces_20sp._20E2_20[genbank_20GCA_5F002157105.1_202017-05-24] 1,656 sequences; 71,019,055 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq579 185 7e-42 seq187 125 6e-24 seq45 116 3e-21 >seq579 Length=22240 Score = 185 bits (204), Expect = 7e-42 Identities = 177/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || || | |||||| | |||||| |||||||||||||| ||||| || |||||||| | Sbjct 1155 CCACCACGTAAACGAAGAACTAAGTGAAGGGTAGATTCCTTTTGGATGTTGTAATCAGAA 1214 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||| | |||| || ||||| ||||| || || || | ||| |||||||| || ||| Sbjct 1215 AGAGTACGACCATCTTCTAATTGTTTACCAGCGAAAATAAGACGTTGTTGATCAGGTGGA 1274 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || |||||||||||||||||||| ||| ||| |||| | ||| ||||| | ||| ||| Sbjct 1275 ATACCTTCTTTATCTTGAATTTTGGCTTTAACATTTTCAATAGTATCAGAAGATTCAACT 1334 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||||||||| || || || || | ||| |||||||| || ||||| Sbjct 1335 TCAAGAGTGATAGTCTTACCAGTAAGAGTCTTTACAAAGATTTGCAT 1381 Score = 181 bits (200), Expect = 8e-41 Identities = 178/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 101240 TTTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCG 101299 ||||| || | | |||||| ||||||||||| |||||||| ||||| || |||||||| Sbjct 924 TTTCCACCACGAAGACGTAAGACTAAATGAAGTGTAGATTCCTTTTGAATGTTGTAATCA 983 Query 101300 GCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGC 101359 | | ||| | |||| || ||||| ||||| || || || | ||| ||||| || || Sbjct 984 GAAAGAGTACGACCATCTTCTAATTGTTTACCAGCGAAAATAAGACGTTGTTGGTCTGGT 1043 Query 101360 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCC 101419 ||||| |||||||||||||||||||| ||| ||| |||| | || ||||| | ||| Sbjct 1044 GGAATACCTTCTTTATCTTGAATTTTGGCTTTAACATTTTCAATGGTATCAGAAGATTCT 1103 Query 101420 ACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| | ||||| ||||| || ||||||||||| ||||| || ||||| Sbjct 1104 ACTTCTAAAGTGATAGTTTTACCAGTTAAAGTTTTAACAAAGATTTGCAT 1153 >seq187 Length=118869 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || || | |||||| | ||| | || || |||||||| ||||| || ||||| || | Sbjct 41189 CCACCACGTAAACGAAGAACAAGGTGGAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAA 41130 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||| | |||| || ||||||||||| ||||| || | ||| ||||| || || || Sbjct 41129 AGAGTACGACCATCTTCTAATTGCTTACCGGCAAAGATAAGACGTTGTTGGTCTGGTGGG 41070 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| |||||||| || || ||| ||| |||| | |||||| || | ||| || Sbjct 41069 ATACCTTCCTTATCTTGGATCTTAGCTTTGACATTTTCGATAGTGTCGGAGGATTCGACC 41010 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| || | || || || || | ||||| || || || ||||| Sbjct 41009 TCAAGGGTAATGGTCTTACCCGTAAGGGTTTTGACGAAGATTTGCAT 40963 >seq45 Length=243278 Score = 116 bits (128), Expect = 3e-21 Identities = 136/184 (74%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 101282 TTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATC 101341 ||||| || ||||| || | || ||| | | |||| || ||||||||||| || || || Sbjct 63453 TTTTGGATGTTGTAGTCAGAGAGAGTACGGTCATCTTCTAATTGCTTACCAGCGAAGATT 63512 Query 101342 AAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCT 101401 ||||| |||||||| || ||||| ||||| || ||||| || || | |||||| | | Sbjct 63513 AAACGTTGTTGATCTGGTGGAATACCTTCCTTTTCTTGGATCTTGTTCTTTACATTAACA 63572 Query 101402 ACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAAT 101461 | |||| || | ||| || ||||| |||| || || ||||| | || |||||||| Sbjct 63573 ATGCTGTCGGAAGATTCAACCTCAAGGGTGATAGTCTTTCCGGTAAGGGTCTTTACAAAA 63632 Query 101462 ATCT 101465 |||| Sbjct 63633 ATCT 63636 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396270402111192