Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Piromyces_20sp._20E2_20[genbank_20GCA_5F002157105.1_202017-05-24] 1,656 sequences; 71,019,055 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq579 165 1e-35 seq97 140 6e-28 seq301 98.7 2e-15 >seq579 Length=22240 Score = 165 bits (182), Expect = 1e-35 Identities = 180/239 (75%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| |||||||| | || ||||| || | || | |||| || || || || Sbjct 1146 ATTTGCATACCACCACGTAAACGAAGAACTAAGTGAAGGGTAGATTCCTTTTGGATGTTG 1205 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 || || || | || | | ||| ||||||||||| || || ||||| | | |||||| Sbjct 1206 TAATCAGAAAGAGTACGACCATCTTCTAATTGTTTACCAGCGAAAATAAGACGTTGTTGA 1265 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 ||||| || || |||||||||||||| ||||||| ||| | |||| ||||||||| ||| Sbjct 1266 TCAGGTGGAATACCTTCTTTATCTTGAATTTTGGCTTTAACATTTTCAATAGTATCAGAA 1325 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGtttttacaaatatttgcatttt 193363 || |||||||| ||||| ||||| ||||| || || || |||||||| ||||||||||| Sbjct 1326 GATTCAACTTCAAGAGTGATAGTCTTACCAGTAAGAGTCTTTACAAAGATTTGCATTTT 1384 Score = 143 bits (158), Expect = 5e-29 Identities = 154/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 193157 ATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTG 193216 ||| | ||||| || || ||| || || || || | || | | ||| |||||||| Sbjct 950 ATGAAGTGTAGATTCCTTTTGAATGTTGTAATCAGAAAGAGTACGACCATCTTCTAATTG 1009 Query 193217 TTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTT 193276 ||| || || ||||| | | ||||| || || || || |||||||||||||| ||||| Sbjct 1010 TTTACCAGCGAAAATAAGACGTTGTTGGTCTGGTGGAATACCTTCTTTATCTTGAATTTT 1069 Query 193277 GGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGT 193336 || ||| | |||| ||| ||||| ||||| || ||||||| ||| ||||||||||| || Sbjct 1070 GGCTTTAACATTTTCAATGGTATCAGAAGATTCTACTTCTAAAGTGATAGTTTTACCAGT 1129 Query 193337 TAGCGtttttacaaatatttgcat 193360 || ||||| ||||| |||||||| Sbjct 1130 TAAAGTTTTAACAAAGATTTGCAT 1153 >seq97 Length=178188 Score = 140 bits (154), Expect = 6e-28 Identities = 176/239 (74%), Gaps = 6/239 (3%) Strand=Plus/Minus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 || || ||||| || | ||||| ||| ||||||||||| ||||| |||||||| | Sbjct 109201 ATGTTGTAGTCAGAAAGGGTTCTGTCATCTTCTAATTGTTTACCGGCGAAAATTAAACGT 109142 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 ||||| || || || || ||||| || ||||| || ||| | || | ||| | |||| | Sbjct 109141 TGTTGGTCTGGTGGGATACCTTCCTTTTCTTGAATCTTGTTCTTAACATTGACAATACTG 109082 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGtttttac--aaatattt 193356 |||||||||||||| || || |||||||| || || || || ||||| || |||| | | Sbjct 109081 TCGGAAGACTCAACCTCAAGGGTTATAGTCTTTCCAGTAAGGGTTTTGACGAAAATCTAT 109022 Query 193357 gcatttta-ttagtaaaataattattttaaataatatatactttatattttaacattat 193414 |||||| ||| || || ||||||| |||| ||| || || |||| || | ||| Sbjct 109021 TGATTTTATTTATTATAAAAATTATT---AATATTATTTAAATTTAATTTCAAAAATAT 108966 >seq301 Length=77503 Score = 98.7 bits (108), Expect = 2e-15 Identities = 164/232 (71%), Gaps = 9/232 (4%) Strand=Plus/Minus Query 193211 TAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTG 193270 ||||||||| || || || |||||||| ||||||| |||| || |||||| |||||| Sbjct 459 TAATTGTTTGCCAGCGAATATTAATCTTATTTGATCAAGAGGAATCCCTTCTAAATCTTG 400 Query 193271 TATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGT---TATAGT 193327 ||||| ||||||||||| ||| ||||| | ||| | | || | ||| | Sbjct 399 AATTTTT-TTTTTATATTTTCAATTGTATCATTATCATCATCATAAGGAATTACTATCTT 341 Query 193328 TTTACCTGTTAGCGtttttacaaatatttgcattttattagtaaaataatt---atttta 193384 ||| ||||| || ||||||||||| | || ||||||| || |||||| ||||| Sbjct 340 TTTTCCTGTAAGGGTTTTTACAAACAAGTGTTTTTTATTTTTATTATAATTTAAATTTTT 281 Query 193385 aataatatatactttatattttaacattatattatacaatgaaaat-ttatt 193435 || | ||| || | ||||| | ||||| || |||| ||| | ||||| Sbjct 280 AAAACTAT-TATTAAATATTGAATTATTATGATACTCAATTAAATTATTATT 230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899635777153920