Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Piromyces_20sp._20E2_20[genbank_20GCA_5F002157105.1_202017-05-24] 1,656 sequences; 71,019,055 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq579 140 5e-28 seq187 84.2 3e-11 >seq579 Length=22240 Score = 140 bits (154), Expect = 5e-28 Identities = 161/214 (75%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| ||||||| || ||||| |||||||| || |||||||| ||| |||| Sbjct 1153 ATGCAAATCTTTGTTAAAACTTTAACTGGTAAAACTATCACTTTAGAAGTAGAATCTTCT 1094 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||| || ||| ||||| |||||||||||||| || || ||||| ||| Sbjct 1093 GATACCATTGAAAATGTTAAAGCCAAAATTCAAGATAAAGAAGGTATTCCACCAGACCAA 1034 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | | |||| || ||||| || | |||||| | ||| | || ||||| || Sbjct 1033 CAACGTCTTATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTTTCTGATTACAAC 974 Query 156003 ATATCCAAAG-AGGCGACGCTTCATTTAGTGTTA 156035 || || |||| | | || ||||||||||| ||| Sbjct 973 AT-TCAAAAGGAATCTACACTTCATTTAGTCTTA 941 Score = 111 bits (122), Expect = 2e-19 Identities = 154/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 ||||||||||| ||| | || || | ||||| || ||||| || | ||||| ||| | Sbjct 1384 AAAATGCAAATCTTTGTAAAGACTCTTACTGGTAAGACTATCACTCTTGAAGTTGAATCT 1325 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 ||||||| |||| ||| || ||| ||||| |||||||||||||| || || || || Sbjct 1324 TCTGATACTATTGAAAATGTTAAAGCCAAAATTCAAGATAAAGAAGGTATTCCACCTGAT 1265 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 |||||| | | |||| || ||||| || | |||||| | ||| | || ||||| Sbjct 1264 CAACAACGTCTTATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTTTCTGATTAC 1205 Query 156000 AATATATCCAAA--GAGGCGACGCTTCATTTAGT 156031 | | ||||||| || | || ||||| ||||| Sbjct 1204 A--ACATCCAAAAGGAATCTACCCTTCACTTAGT 1173 >seq187 Length=118869 Score = 84.2 bits (92), Expect = 3e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | ||||| | || || || || ||||| | || |||||| || Sbjct 40963 ATGCAAATCTTCGTCAAAACCCTTACGGGTAAGACCATTACCCTTGAGGTCGAATCCTCC 41022 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||| || ||| ||| || |||||||| ||||| || || ||||| ||| Sbjct 41023 GACACTATCGAAAATGTCAAAGCTAAGATCCAAGATAAGGAAGGTATCCCACCAGACCAA 41082 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 ||| | | || | |||||||||||| | |||||| Sbjct 41083 CAACGTCTTATCTTTGCCGGTAAGCAATTAGAAGAT 41118 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731856850249600