Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Piromyces_20sp._20E2_20[genbank_20GCA_5F002157105.1_202017-05-24] 1,656 sequences; 71,019,055 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq579 167 4e-36 seq97 95.1 2e-14 >seq579 Length=22240 Score = 167 bits (184), Expect = 4e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902 ||||| | ||| ||||| |||||||| | |||| || || ||| || ||||| || Sbjct 927 CCACCACGAAGACGTAAGACTAAATGAAGTGTAGATTCCTTTTGAATGTTGTAATCAGAA 986 Query 171903 AAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962 | || || | || || |||||||||||||| ||||| | | |||||||| ||||| Sbjct 987 AGAGTACGACCATCTTCTAATTGTTTACCAGCGAAAATAAGACGTTGTTGGTCTGGTGGA 1046 Query 171963 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACT 172022 || |||||||||||||| ||||| ||| ||||| || ||||| || ||||||||| Sbjct 1047 ATACCTTCTTTATCTTGAATTTTGGCTTTAACATTTTCAATGGTATCAGAAGATTCTACT 1106 Query 172023 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 |||| ||| || |||||||||||||| ||||||| || || ||||| Sbjct 1107 TCTAAAGTGATAGTTTTACCAGTTAAAGTTTTAACAAAGATTTGCAT 1153 Score = 129 bits (142), Expect = 1e-24 Identities = 172/238 (72%), Gaps = 1/238 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | | || | ||||| || | |||| || || || || ||||| Sbjct 1152 ATACCACCACGTAAACGAAGAACTAAGTGAAGGGTAGATTCCTTTTGGATGTTGTAATCA 1211 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || || | || || |||||||||||||| ||||| | | ||||| |||||| Sbjct 1212 GAAAGAGTACGACCATCTTCTAATTGTTTACCAGCGAAAATAAGACGTTGTTGATCAGGT 1271 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||||||||| ||||| ||| ||||| |||||||| || ||||| Sbjct 1272 GGAATACCTTCTTTATCTTGAATTTTGGCTTTAACATTTTCAATAGTATCAGAAGATTCA 1331 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTTATTAT 172077 ||||| ||||| || || |||||||| | || || | || || |||||||| |||| Sbjct 1332 ACTTCAAGAGTGATAGTCTTACCAGTAAGAGTCTTTACAAAGATTTGCATTTT-TTAT 1388 >seq97 Length=178188 Score = 95.1 bits (104), Expect = 2e-14 Identities = 128/177 (72%), Gaps = 6/177 (3%) Strand=Plus/Minus Query 171912 TCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCT 171971 || || || ||||||||||| || |||||||| | |||||||| ||||| || ||||| Sbjct 109177 TCATCTTCTAATTGTTTACCGGCGAAAATTAAACGTTGTTGGTCTGGTGGGATACCTTCC 109118 Query 171972 TTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTA 172031 || ||||| || || || || ||||| ||| | || || || || || || || || Sbjct 109117 TTTTCTTGAATCTTGTTCTTAACATTGACAATACTGTCGGAAGACTCAACCTCAAGGGTT 109058 Query 172032 ATGGTTTTACCAGTTAATGTTTTAATGAATATC--TGCAT----TTTATTATAAAAA 172082 || || || ||||| | ||||| | ||| ||| | || ||||||||||||| Sbjct 109057 ATAGTCTTTCCAGTAAGGGTTTTGACGAAAATCTATTGATTTTATTTATTATAAAAA 109001 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905117263684800