Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Piromyces_20sp._20E2_20[genbank_20GCA_5F002157105.1_202017-05-24] 1,656 sequences; 71,019,055 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq603 154 4e-32 seq73 132 1e-25 seq303 118 3e-21 seq413 104 7e-17 seq7 91.5 4e-13 >seq603 Length=19817 Score = 154 bits (170), Expect = 4e-32 Identities = 352/516 (68%), Gaps = 18/516 (3%) Strand=Plus/Minus Query 233272 AGCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCAGACCACCATCATT 233331 |||||||||| |||||||||||| |||||||||||| | ||| |||||||||||| Sbjct 11916 AGCACCGTGACTAATCATACAATCCTTTTCCATTTCACCGAAACGAAGACCACCATCACG 11857 Query 233332 TGACCTACCCTGGACTGTTTGACGAGTTAAAACAGTTCTTGGACCCTGAGCACGATAATT 233391 || ||||| | ||||| ||||||||| | || | |||||| |||||||| | Sbjct 11856 AGATCTACCTTCGACTGGTTGACGAGTAAGAATTTGTACTGGACCACGAGCACGACTGTG 11797 Query 233392 AATTTTATCTTTAACCATATGCTTCAGTCTCATATAATAACACGGACCAATAAATAGTTC 233451 ||| ||||| | ||||||||||| | | |||||| ||||||| || | || Sbjct 11796 AATCTTATCATCGACCATATGCTTTAAACGTTGGTAATAAGTTGGACCAAGGAAGATTTG 11737 Query 233452 TGCGTGTAATTGTTCCCCAGATTCACCGCTGTATAAAACTTCATTACC-CGATGAATTGT 233510 || || | || | || | | |||| | | | |||||| ||| ||| || | || Sbjct 11736 AGCTTGAAGTTTCTTACCTGTGTGACCGTTAAACATAACTTCGAAACCACGA-GATTGGT 11678 Query 233511 AACCAATATCTTTTAATAGAGAACCAAATACCTGATGCTTTGGACCTTTATTAGCAAACG 233570 ||||| | ||| |||| || | ||||| || | | | || || | ||| | Sbjct 11677 AACCATTTTCTCTTAAAAGTTTA-GAAATAGCTTCTACAGT-AAC----ATCCGTAAATG 11624 Query 233571 CAGTACAATCACCAAAACCACCA-TACGTCGCACACGCTTTACCCATTAAAGTTTCTATC 233629 ||| |||||| | ||||| || | | | | ||||||| | |||| ||| | | Sbjct 11623 GTGTAGCATCACCTTCATCACCAGTAAG-AGTAGAAACTTTACCAAGTAAACATTCAACC 11565 Query 233630 AACTGACCGATAGTCATTCTACTTGGTAGAGCGTGTGGATTGATAATTAAATCTGGACGT 233689 || ||||| || ||||| | | ||| | || ||||| || ||||| | |||||| || Sbjct 11564 AAGTGACCAATTGTCATACGAGATGGAATGGCATGTGGGTTAATAATAATATCTGG-TGT 11506 Query 233690 ACT-CCCTCCGATGTAAAAGGCATATCTTTTTCAG--GGATTA-TCAGTCCAACTGTTCC 233745 | | || | | ||||| |||||||| ||||| ||| | ||| ||||| || || Sbjct 11505 AATACCATTAGCAGTAAATGGCATATC---TTCAGTACGATAAGTCATACCAACAGTACC 11449 Query 233746 CTTTTGGCCGCATCTACTACAGAATTTATCACCCAT 233781 |||||| || ||||||| ||| ||||||||||| Sbjct 11448 CTTTTGACCATGTCTACTAGCGAACTTATCACCCAT 11413 Score = 143 bits (158), Expect = 8e-29 Identities = 420/638 (66%), Gaps = 22/638 (3%) Strand=Plus/Minus Query 251412 ACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGACCCTT 251471 |||||| || ||| || || || | || |||||| || || | || || |||| Sbjct 11988 ACCACATAAATCACAAACGTGAACACGATAGGCATCACTAGCATCGAAAAGACGTTCCTT 11929 Query 251472 GGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAG 251531 ||| ||| |||||||| |||||||||||| |||||||||||||||||||| Sbjct 11928 CAAGAATTGAGCAGCACCGTGACTAATCATACAATCCTTTTCCATTTCACCGAAACGAAG 11869 Query 251532 ACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGAT 251591 ||||||||| |||| ||||| ||| | || |||||||| ||| | | ||||| Sbjct 11868 ACCACCATCACGAGATCTACCTTCGACTGGTTGACGAGTAAGAATTTGTACTGGACCACG 11809 Query 251592 GGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACC 251651 | || || || |||||||| ||||||||||| | ||| ||||| | | ||||| Sbjct 11808 AGCACGACTGTGAATCTTATCATCGACCATATGCTTTAAACGTTGGTAATAAGTTGGACC 11749 Query 251652 GATGAAGAT----GCTCGAAGGCATTTGCTCTCCAGTTAGAGCGTTATACATAACTTCGT 251707 | |||||| ||| |||| || || || || || ||||| ||||||||||| Sbjct 11748 AAGGAAGATTTGAGCTTGAAG----TTTCTTACCTGTGTGACCGTTAAACATAACTTCGA 11693 Query 251708 TTCCATTAGATTCATAACCAAGTTTCT-GTAGCTCTGAAGCAATATCACCAATCTTGAAT 251766 ||| ||||| ||||| | ||||| || | || |||| | | | | | Sbjct 11692 AACCACGAGATTGGTAACC-ATTTTCTCTTAAAAGTTTAGAAATAGCTTCTACAGTAACA 11634 Query 251767 TTGCTAAAACTGGTG--CCGTCTCCGTAAAGACCCATTTGAATCAACACTTTGCC---TA 251821 | |||| ||||| | || || | | ||| | || | | ||||| || || Sbjct 11633 TCCGTAAA--TGGTGTAGCATCACCTTCATCACCAGTAAGAGTAGAAACTTTACCAAGTA 11576 Query 251822 AAAGTGTCTCTTTCAGTTGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGA 251881 || | || || || | || ||||||||| ||||| ||||| || || || | Sbjct 11575 AACAT---TCAACCAAGTGACCAATTGTCATACGAGATGGAATGGCATGTGGGTTAATAA 11519 Query 251882 TGATGTCGGGTTTCAGTCCATCAGCAGTGAAGGGCATATCCTTTTCCTCAATAA-TGTTT 251940 | || || ||| | | |||| |||||| || ||||||| ||| | |||| | | Sbjct 11518 TAATATCTGGTGTAATACCATTAGCAGTAAATGGCATAT-CTTCAGTACGATAAGTCATA 11460 Query 251941 CCAATAGTTCCCTTTTGTCCGTGACGAGAACTGAACTTATCACCAATAACAGGACGGCGA 252000 |||| ||| |||||||| || || | | | |||||||||||| || ||| | Sbjct 11459 CCAACAGTACCCTTTTGACCATGTCTACTAGCGAACTTATCACCCATTTGTGGAATTCTC 11400 Query 252001 ACACTACGAAGGCGAACCTTACAGAAGTTGTAACCATC 252038 |||||| | ||||||||| ||| || |||||| Sbjct 11399 GTACTACGTACACGAACCTTAACGAATTTCATACCATC 11362 >seq73 Length=205935 Score = 132 bits (146), Expect = 1e-25 Identities = 254/372 (68%), Gaps = 2/372 (1%) Strand=Plus/Plus Query 59975 ATATCTGTGCTAAAACCAGTACCAATACCCTTTGTTCCATTGATAAGAATCATCGGGATA 60034 |||| || ||| |||||||||||||||| | | ||||| ||||||| ||| || | | Sbjct 183330 ATATTAGTACTATAACCAGTACCAATACCTTCAGCACCATTTATAAGAACCATGGGTAAA 183389 Query 60035 ATTGGGATATAATAAACTGGCTCAACACTATCACCATCATCTTTTAAGTATGTTAAAACC 60094 ||||| ||||| | ||| |||| | | ||||||||| ||||| ||| | || Sbjct 183390 ATTGGAATATACCATTTTGGTTCAATCATTTGACCATCATCATTTAAATATTCAAGAATA 183449 Query 60095 TTGTCGTCA-ATTTCGGGAAATATAGCCCGAGTAATCTTGGATAATTGTGTGAAAATATA 60153 || || ||| ||||| ||| || | ||||| || | |||||| ||||||||||| Sbjct 183450 TTATCATCAGATTTCTTAAAAATTAATCT-AGTAACTTTAGCTAATTGAGTGAAAATATA 183508 Query 60154 CCTCTCGGATGCTGCGTCCTTGCCACCCATAAGACGGGTTCCAAATTGTCCGTTTGGCTG 60213 | | || || ||||| ||||| | ||| || |||||||| || ||||| Sbjct 183509 ACGAGCACTGGCGGCATCCTTTCCACCTTGTAAACGTGTACCAAATTGACCATTTGGTAC 183568 Query 60214 GAATAGATTAATGTTGTTAGAGCCTACGAAATTTTGAGCGAGACCAACAATAGCACCATT 60273 |||| || || ||| || || |||| ||| || | | |||||||||| | Sbjct 183569 TAATAATGGAACATTATTACTACCAACAAAATCTTGTGCTAAATTAACAATAGCAAGAGA 183628 Query 60274 TAAACTGGCTTCACCGTGATGATATCCAGAATGTTCTGAAACATATCCACTGAATTGTGC 60333 | ||| |||||| || ||||| ||| ||||| | || ||| ||| | | ||| || Sbjct 183629 AAGACTTTGTTCACCATGGTGATAAGCAGTGTGTTCAGCAATATAACCAGTAAGTTGAGC 183688 Query 60334 GACTTTAATTTC 60345 || |||||||| Sbjct 183689 AACCTTAATTTC 183700 >seq303 Length=76964 Score = 118 bits (130), Expect = 3e-21 Identities = 166/233 (71%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 302584 TTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGA 302643 || || | |||||| ||||||||||||||| || ||||||||||| |||||||| | | Sbjct 74269 TTAATAAGACGACGTTGAATATAACCAGTTTCAGCAGTTTTTACAGCAGTATCAATCAAA 74210 Query 302644 CCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAG 302703 || |||||||||||||||| |||||||| | |||| || || || | || | | Sbjct 74209 CCTTCACGACCACCCATAGCGTGGAAGAAGAATTCTTGAGGGGTTAAACCACGAAGATAT 74150 Query 302704 GAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGG 302763 || | || ||||||||||| | || || | || ||| |||||||| || || Sbjct 74149 GAATTTTCTACGAAACCACGAGATTCTGGACTTTGATCATCCTTTGTAAAGTGAGGAAGT 74090 Query 302764 GTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCC 302816 || || | | | | || |||| |||||||| || || || || || || || Sbjct 74089 GTTCTATATTTAAAACCAAATGGAATACGCTTACCTTCGACATTTTGTTGACC 74037 Score = 111 bits (122), Expect = 5e-19 Identities = 141/192 (73%), Gaps = 13/192 (7%) Strand=Plus/Minus Query 301766 TTAAATAAATAGTACAGGATGGATTCTTTGTGTTTTCCGATAGAGACAG-----AATTTC 301820 ||||||| | ||| | |||||| |||| | || | ||| |||| |||| | Sbjct 75114 TTAAATATACAGTTAAAGATGGAGTCTTGATATTCT----TAGCGACATTAATTAATTCC 75059 Query 301821 TTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCAAAGTGGAA 301880 ||||| ||| || |||||| | || || || ||| || ||||||||| ||||||| Sbjct 75058 TTCAA-ACGAGGTACACCAAGAGTGACATT---CTTTGAACTTACACCAGCATAGTGGAA 75003 Query 301881 AGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATCATACCAAC 301940 ||| || | || | |||||||| ||| |||||||||||||| || ||||| ||||||| Sbjct 75002 AGTGTTTAATGTCATTTGAGTAGCTGGTTCACCAATACTTTGAGCAGCAATAGTACCAAC 74943 Query 301941 CATTTCTCCTGG 301952 |||||| ||||| Sbjct 74942 CATTTCACCTGG 74931 >seq413 Length=51135 Score = 104 bits (114), Expect = 7e-17 Identities = 206/303 (68%), Gaps = 4/303 (1%) Strand=Plus/Minus Query 289028 TACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTG 289087 ||||||||||||| | ||| ||||| |||| | ||| |||| || | | || | || Sbjct 20949 TACCAACAGCATCTAATTCATCAATAAAAACAATACATGGAGCCTTCTTACGAGCTAATG 20890 Query 289088 CAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAG 289147 | | ||||| | || | || |||| ||||||||| | ||| |||||||| | Sbjct 20889 CTACTAATTGACGAACTCTTTTAGCACCAACACCAACATAAAGTTCATCAAATTCACTAC 20830 Query 289148 CGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCT 289207 | | ||| | || | |||| | ||| |||||||| || | |||| | || | Sbjct 20829 CACTCATTTGGAAAAAAGGTACACCAGATTCACCTGCTACAGCTTTTGCCAAATACGTTT 20770 Query 289208 TACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACT 289267 |||||||||| |||||||| | || | | || || || | ||| | ||| | || Sbjct 20769 TACCTGTTCCTGGTGGTCCATACAACAATATACCTTTAGGGAGTTTACCTCCA--ATTCT 20712 Query 289268 --TATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTC 289325 || |||| || || ||||||||||||| |||| ||| ||||| | ||||||||| Sbjct 20711 TGTAAATTTTTCTGGATTCTTTAAAAATTCAACAACTTCTCTGAGTTCTTCTTTTGCCTC 20652 Query 289326 ATC 289328 ||| Sbjct 20651 ATC 20649 >seq7 Length=499224 Score = 91.5 bits (100), Expect = 4e-13 Identities = 104/139 (75%), Gaps = 3/139 (2%) Strand=Plus/Minus Query 301815 AATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCAAA 301874 |||||| || ||| |||| ||| |||| ||||| ||| | ||| ||||||||| Sbjct 453175 AATTTCACGAAGACGTGGAATACCGAGGGTAACGTT---CTTAGCACCAAAACCAGCAAA 453119 Query 301875 GTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATCAT 301934 ||||||||| || | || | ||||||| |||| ||||||||||||| || || | | Sbjct 453118 GTGGAAAGTGTTTAAGGTCATTTGAGTACTTGGTTCACCAATACTTTCAGCAGCTAATAA 453059 Query 301935 ACCAACCATTTCTCCTGGT 301953 |||||| |||||||||| Sbjct 453058 ACCAACAGATTCTCCTGGT 453040 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471786371710072