Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Piromyces_20sp._20E2_20[genbank_20GCA_5F002157105.1_202017-05-24] 1,656 sequences; 71,019,055 total letters Query= NC_021901.1 Length=197693 Score E Sequences producing significant alignments: (Bits) Value seq151 140 4e-28 seq73 129 7e-25 seq4 98.7 1e-15 seq603 87.8 2e-12 >seq151 Length=136619 Score = 140 bits (154), Expect = 4e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 172399 AAGAACTTTTATGGGTTATTAAAGGTTCAACTGATTCAAAACAATTAAATGATATAGGTG 172458 ||||| | || ||| |||| | ||| || ||||||||| |||| | | ||||| Sbjct 132523 AAGAATTGTTTTGGTTTATCAGGGGTGATACAGATTCAAAAATATTATCAAAAAAAGGTG 132582 Query 172459 TTAAAGTTTGGAATGATAATGGTTCTCGTGAATTTTTAGATTTATGCGGGTTTACTGAAA 172518 ||||| ||||| | | |||||||||||||||||| | ||| | || || ||||||| Sbjct 132583 TTAAAATTTGGGAAGGAAATGGTTCTCGTGAATTTCTTGATAAAATTGGTTTGACTGAAA 132642 Query 172519 GAAAAGAAGGTGATTTAGGCCCAATTTATGGATTTCAATGGAGACATGCAGGGGCTCAAT 172578 || | |||||||||||||| ||||| ||||| | |||||| | ||| || || ||| Sbjct 132643 GAGAGGAAGGTGATTTAGGTCCAATATATGGTTGGCAATGGCGTCATTTCGGTGCAAAAT 132702 Query 172579 ATATCGACTGTGATACAGATTACACAGGACAAGGA 172613 || | || ||| |||||||||| || ||| ||||| Sbjct 132703 ATGTAGATTGTCATACAGATTATACTGGAAAAGGA 132737 >seq73 Length=205935 Score = 129 bits (142), Expect = 7e-25 Identities = 133/174 (76%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 165950 ATTAAGGTTGCTCAATTAAGTGGGTATGTTGCAGAACAAACAGATTATAAGCATGGTGAA 166009 ||||||||||||||| | | ||| ||| |||| ||||| || | |||| | ||||||||| Sbjct 183697 ATTAAGGTTGCTCAACTTACTGGTTATATTGCTGAACACACTGCTTATCACCATGGTGAA 183638 Query 166010 CAAAATTTATGTGAAACTATAATTAAGTTTGCCCAAGATTTTGTTGGTACAAATAATATA 166069 |||| | | | | |||| |||| || || |||||||||||||||| |||||| | Sbjct 183637 CAAAGTCTTTCTCTTGCTATTGTTAATTTAGCACAAGATTTTGTTGGTAGTAATAATGTT 183578 Query 166070 GCATTACTTGAACCTGATGGTCAATTTGGTACCAGATTAGAAGGAGGTAAAGAT 166123 ||||| | | ||| |||||||||||||||| | ||| |||| || || ||| Sbjct 183577 CCATTATTAGTACCAAATGGTCAATTTGGTACACGTTTACAAGGTGGAAAGGAT 183524 >seq4 Length=619201 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/131 (78%), Gaps = 2/131 (2%) Strand=Plus/Plus Query 194242 CCTGAAATAGGGGATAAATTTTGTTCGGGA-ATGGCTCAAAAAGGAACTTGTGGTATGAT 194300 |||||| |||| |||||||||| || || |||| ||||||||| ||||||| | || Sbjct 375485 CCTGAATTAGGAGATAAATTTTCATCAAGACATGG-TCAAAAAGGTGTTTGTGGTTTAAT 375543 Query 194301 TTATTCACAAGAAGATATGCCATTTACAACTTCAGGTATGGTACCAGATATTATTATCAA 194360 | | ||||||||||||||||||||| | ||||| || |||||||||||||| || Sbjct 375544 TGTTAACCAAGAAGATATGCCATTTACAGATCTTGGTATTGTTCCAGATATTATTATGAA 375603 Query 194361 TCCAAATTGTA 194371 ||| || ||| Sbjct 375604 CCCACATGGTA 375614 >seq603 Length=19817 Score = 87.8 bits (96), Expect = 2e-12 Identities = 155/221 (70%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 194566 ACTGGTaaaaaaaTTGAAAATAAAATTTTTATAGGGCCAACTTATTACCATCGTCTTAAA 194625 || ||||| ||| || || | |||| || | || |||||||||||||| ||| | || Sbjct 11716 ACAGGTAAGAAACTTCAAGCTCAAATCTTCCTTGGTCCAACTTATTACCAACGTTTAAAG 11775 Query 194626 CACATGGTTAAGGATAAAATGCATGCTAGAAGTCATGGGCAAGTAACTACT-TTACATCG 194684 || ||||| | ||||| || || | | || ||| | |||| | | |||| ||| Sbjct 11776 CATATGGTCGATGATAAGATTCACAGTCGTGCTCGTGGTCCAGTACAAATTCTTAC-TCG 11834 Query 194685 ACAACCAAATTGTGGTCGTTCTCAAGGTGGAGGTTTAAGATTTGGAGAAATGGAAAAAGA 194744 |||||| ||| | |||| | ||| ||| | | || || ||||||||||| || Sbjct 11835 TCAACCAGTCGAAGGTAGATCTCGTGATGGTGGTCTTCGTTTCGGTGAAATGGAAAAGGA 11894 Query 194745 CTGTAT-TTTAGTCCATGGTGCTACTCAATTCTTAAATGAA 194784 ||||| ||||| || |||||| |||||||||| || ||| Sbjct 11895 TTGTATGATTAGT-CACGGTGCTGCTCAATTCTTGAAGGAA 11934 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632476507465280