Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Piromyces_20sp._20E2_20[genbank_20GCA_5F002157105.1_202017-05-24] 1,656 sequences; 71,019,055 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq579 159 3e-34 >seq579 Length=22240 Score = 159 bits (176), Expect = 3e-34 Identities = 163/210 (78%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 29578 ACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCG 29637 || |||||||| || ||||| ||||||||||| ||||| | || || ||| ||| || Sbjct 945 ACTAAATGAAGTGTAGATTCCTTTTGAATGTTGTAATCAGAAAGAGTACGACCATCTTCT 1004 Query 29638 AGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGT 29697 | |||||| ||||| | || | | ||| || || || |||||||| ||||| ||||| Sbjct 1005 AATTGTTTACCAGCGAAAATAAGACGTTGTTGGTCTGGTGGAATACCTTCTTTATCTTG- 1063 Query 29698 AATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTT 29756 |||||| | ||| ||| |||| | || |||||| ||||||||| | ||| |||||||| Sbjct 1064 AATTTTGGCTTTAACATTTTCAATGGTATCAGAAGATTCTACTTCTAAAGTGATAGTTTT 1123 Query 29757 GCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||||| ||||||||||| || ||||| Sbjct 1124 ACCAGTTAAAGTTTTAACAAAGATTTGCAT 1153 Score = 154 bits (170), Expect = 1e-32 Identities = 169/222 (76%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 29569 AAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGA 29628 ||||| || || || ||||| || ||||| ||||| ||||| ||||| | || || ||| Sbjct 1164 AAACGAAGAACTAAGTGAAGGGTAGATTCCTTTTGGATGTTGTAATCAGAAAGAGTACGA 1223 Query 29629 GAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCT 29688 ||| || | |||||| ||||| | || | | ||| ||||| || |||||||| ||| Sbjct 1224 CCATCTTCTAATTGTTTACCAGCGAAAATAAGACGTTGTTGATCAGGTGGAATACCTTCT 1283 Query 29689 TTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGT 29747 || ||||| |||||| | ||| ||| |||| | ||| |||||| ||| ||||||||||| Sbjct 1284 TTATCTTG-AATTTTGGCTTTAACATTTTCAATAGTATCAGAAGATTCAACTTCAAGAGT 1342 Query 29748 TATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 ||||| || ||||| | || || ||||| || |||||||| Sbjct 1343 GATAGTCTTACCAGTAAGAGTCTTTACAAAGATTTGCATTTT 1384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385211425313496