Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Piromyces_20sp._20E2_20[genbank_20GCA_5F002157105.1_202017-05-24] 1,656 sequences; 71,019,055 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq151 152 7e-32 seq73 120 4e-22 seq303 109 7e-19 seq4 104 3e-17 seq603 84.2 3e-11 >seq151 Length=136619 Score = 152 bits (168), Expect = 7e-32 Identities = 168/224 (75%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 168526 AAGAACTTTTATGGGTTATAAAAGGTTCAACTGATTCAAAACAATTAAATGATATAGGTG 168585 ||||| | || ||| |||| | ||| || ||||||||| |||| | | ||||| Sbjct 132523 AAGAATTGTTTTGGTTTATCAGGGGTGATACAGATTCAAAAATATTATCAAAAAAAGGTG 132582 Query 168586 TTAAAGTTTGGAACGATAATGGTTCTCGTGAATTTTTAGATTTATGTGGTTTTACCGAAA 168645 ||||| ||||| | | |||||||||||||||||| | ||| | |||||| || |||| Sbjct 132583 TTAAAATTTGGGAAGGAAATGGTTCTCGTGAATTTCTTGATAAAATTGGTTTGACTGAAA 132642 Query 168646 GAAAAGAAGGTGATTTAGGTCCAATTTATGGATTTCAATGGAGACATGCAGGAGCTCAAT 168705 || | |||||||||||||||||||| ||||| | |||||| | ||| || || ||| Sbjct 132643 GAGAGGAAGGTGATTTAGGTCCAATATATGGTTGGCAATGGCGTCATTTCGGTGCAAAAT 132702 Query 168706 ATATTGACTGTGATACAGATTACACCGGACAAGGAGTAGACCAA 168749 || | || ||| |||||||||| || ||| ||||| ||| ||| Sbjct 132703 ATGTAGATTGTCATACAGATTATACTGGAAAAGGAAAAGATCAA 132746 >seq73 Length=205935 Score = 120 bits (132), Expect = 4e-22 Identities = 131/174 (75%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 162998 ATTAAGGTTGCTCAATTAAGTGGGTATGTTGCGGAACAAACAGACTATAAACACGGTGAA 163057 ||||||||||||||| | | ||| ||| |||| ||||| || | ||| | || |||||| Sbjct 183697 ATTAAGGTTGCTCAACTTACTGGTTATATTGCTGAACACACTGCTTATCACCATGGTGAA 183638 Query 163058 CAAAATTTATGTGAAACTATAATTAAGTTTGCCCAAGATTTTGTTGGTACAAATAATATA 163117 |||| | | | | |||| |||| || || |||||||||||||||| |||||| | Sbjct 183637 CAAAGTCTTTCTCTTGCTATTGTTAATTTAGCACAAGATTTTGTTGGTAGTAATAATGTT 183578 Query 163118 GCATTACTTGAACCTGATGGTCAATTTGGTACCAGATTAGAAGGAGGTAAAGAT 163171 ||||| | | ||| |||||||||||||||| | ||| |||| || || ||| Sbjct 183577 CCATTATTAGTACCAAATGGTCAATTTGGTACACGTTTACAAGGTGGAAAGGAT 183524 >seq303 Length=76964 Score = 109 bits (120), Expect = 7e-19 Identities = 72/80 (90%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 51988 CATATAATGCTGATTTTGATGGGGATGAAATGAATTTACATGTTCCTCAATCATATGGAG 52047 |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| | Sbjct 73159 CATATAATGCTGATTTTGATGGTGATGAAATGAATTTACACGTTCCTCAATCATATGAAA 73218 Query 52048 CTACTGCTGAATTACAAGAA 52067 ||| |||||| | |||||| Sbjct 73219 CTAGAGCTGAAATTCAAGAA 73238 >seq4 Length=619201 Score = 104 bits (114), Expect = 3e-17 Identities = 103/131 (79%), Gaps = 2/131 (2%) Strand=Plus/Plus Query 193446 CCTGAAATAGGGGATAAATTTTGTTCAGGA-ATGGCCCAAAAAGGAACTTGTGGTATGAT 193504 |||||| |||| |||||||||| ||| || |||| | ||||||| ||||||| | || Sbjct 375485 CCTGAATTAGGAGATAAATTTTCATCAAGACATGGTC-AAAAAGGTGTTTGTGGTTTAAT 375543 Query 193505 TTATTCACAAGAAGATATGCCATTTACAGCTTCAGGTATGGTACCAGATATTATTATTAA 193564 | | |||||||||||||||||||||| | ||||| || |||||||||||||| || Sbjct 375544 TGTTAACCAAGAAGATATGCCATTTACAGATCTTGGTATTGTTCCAGATATTATTATGAA 375603 Query 193565 TCCAAATTGTA 193575 ||| || ||| Sbjct 375604 CCCACATGGTA 375614 >seq603 Length=19817 Score = 84.2 bits (92), Expect = 3e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 193482 CAAAAAGGAACTTGTGGTATGATTTATTCACAAGAAGATATGCCATTTACAGCTTCAGGT 193541 ||||| || ||| |||||||| |||| ||||||||||||||||| ||| ||| Sbjct 11443 CAAAAGGGTACTGTTGGTATGACTTATCGTACTGAAGATATGCCATTTACTGCTAATGGT 11502 Query 193542 ATGGTACCAGATATTATTATTAATCCAAATTGTATTCCATCCAGAATGACCATT 193595 || |||||||||||||||||| ||| || |||||||| | ||||| ||| Sbjct 11503 ATTACACCAGATATTATTATTAACCCACATGCCATTCCATCTCGTATGACAATT 11556 Score = 82.4 bits (90), Expect = 1e-10 Identities = 155/222 (70%), Gaps = 6/222 (3%) Strand=Plus/Plus Query 193770 ACTGGTAAAAGAATTGAAAATAAAATTTTTATAGGGCCAACTTATTATCATCGTCTTAAA 193829 || ||||| | | || || | |||| || | || ||||||||||| || ||| | || Sbjct 11716 ACAGGTAAGAAACTTCAAGCTCAAATCTTCCTTGGTCCAACTTATTACCAACGTTTAAAG 11775 Query 193830 CATATGGTTAAGGATAAAATGCATGCTAGAAGTCATGGACAAGTGACTACTT--TACATC 193887 |||||||| | ||||| || || | | || ||| | ||| || | || ||| || Sbjct 11776 CATATGGTCGATGATAAGATTCACAGTCGTGCTCGTGGTCCAGT-ACAAATTCTTAC-TC 11833 Query 193888 GACAACCAAATTGTGGTCGTTCTCAAGGTGGAGGTTTAAGATTTGGAGAAATGGAGAAAG 193947 | |||||| ||| | |||| | ||| ||| | | || || |||||||| || | Sbjct 11834 GTCAACCAGTCGAAGGTAGATCTCGTGATGGTGGTCTTCGTTTCGGTGAAATGGAAAAGG 11893 Query 193948 ACTGTATT-TTAGTTCATGGTGCTACTCAATTCTTGAATGAA 193988 | ||||| ||||| || |||||| ||||||||||||| ||| Sbjct 11894 ATTGTATGATTAGT-CACGGTGCTGCTCAATTCTTGAAGGAA 11934 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635164451823680