Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Piromyces_20sp._20E2_20[genbank_20GCA_5F002157105.1_202017-05-24] 1,656 sequences; 71,019,055 total letters Query= NC_023615.1 Length=196456 Score E Sequences producing significant alignments: (Bits) Value seq151 145 1e-29 seq73 125 9e-24 seq303 111 2e-19 seq4 95.1 2e-14 seq603 86.0 8e-12 >seq151 Length=136619 Score = 145 bits (160), Expect = 1e-29 Identities = 161/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 171611 AAGAACTTTTATGGGTTATTAAAGGTTCAACTGATTCAAAACAATTAAATGATATAGGTG 171670 ||||| | || ||| |||| | ||| || ||||||||| |||| | | ||||| Sbjct 132523 AAGAATTGTTTTGGTTTATCAGGGGTGATACAGATTCAAAAATATTATCAAAAAAAGGTG 132582 Query 171671 TTAAAGTTTGGAATGATAATGGTTCTCGTGAATTTTTAGATTTATGCGGGTTTACTGAAA 171730 ||||| ||||| | | |||||||||||||||||| | ||| | || || ||||||| Sbjct 132583 TTAAAATTTGGGAAGGAAATGGTTCTCGTGAATTTCTTGATAAAATTGGTTTGACTGAAA 132642 Query 171731 GAAAAGAAGGTGATTTAGGTCCAATTTATGGATTTCAATGGAGACATGCAGGGGCTCAAT 171790 || | |||||||||||||||||||| ||||| | |||||| | ||| || || ||| Sbjct 132643 GAGAGGAAGGTGATTTAGGTCCAATATATGGTTGGCAATGGCGTCATTTCGGTGCAAAAT 132702 Query 171791 ATATCGACTGTTATACAGATTACACAGGACAAGGA 171825 || | || ||| |||||||||| || ||| ||||| Sbjct 132703 ATGTAGATTGTCATACAGATTATACTGGAAAAGGA 132737 >seq73 Length=205935 Score = 125 bits (138), Expect = 9e-24 Identities = 132/174 (76%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 165160 ATTAAAGTTGCTCAATTAAGTGGGTATGTTGCAGAACAAACAGATTATAAACATGGTGAA 165219 ||||| ||||||||| | | ||| ||| |||| ||||| || | |||| | ||||||||| Sbjct 183697 ATTAAGGTTGCTCAACTTACTGGTTATATTGCTGAACACACTGCTTATCACCATGGTGAA 183638 Query 165220 CAAAATTTATGTGAAACTATAATTAAGTTTGCCCAAGATTTTGTTGGTACAAATAATATA 165279 |||| | | | | |||| |||| || || |||||||||||||||| |||||| | Sbjct 183637 CAAAGTCTTTCTCTTGCTATTGTTAATTTAGCACAAGATTTTGTTGGTAGTAATAATGTT 183578 Query 165280 GCATTACTTGAACCTGATGGTCAATTTGGTACCAGATTAGAAGGAGGTAAAGAT 165333 ||||| | | ||| |||||||||||||||| | ||| |||| || || ||| Sbjct 183577 CCATTATTAGTACCAAATGGTCAATTTGGTACACGTTTACAAGGTGGAAAGGAT 183524 >seq303 Length=76964 Score = 111 bits (122), Expect = 2e-19 Identities = 84/99 (85%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 50419 AATTTAGCTATGACTAAAGCATATAATGCTGATTTTGATGGGGATGAAATGAATTTACAT 50478 |||||| || | ||| |||||||||||||||||||||| ||||||||||||||||| Sbjct 73140 AATTTATCTGTTACTTCTCCATATAATGCTGATTTTGATGGTGATGAAATGAATTTACAC 73199 Query 50479 GTTCCTCAATCATATGGAGCTACTGCTGAATTACAAGAA 50517 |||||||||||||||| | ||| |||||| | |||||| Sbjct 73200 GTTCCTCAATCATATGAAACTAGAGCTGAAATTCAAGAA 73238 >seq4 Length=619201 Score = 95.1 bits (104), Expect = 2e-14 Identities = 101/131 (77%), Gaps = 2/131 (2%) Strand=Plus/Plus Query 192999 CCTGAAATAGGGGATAAATTTTGTTCGGGA-ATGGCCCAAAAAGGAACTTGTGGTATGAT 193057 |||||| |||| |||||||||| || || |||| | ||||||| ||||||| | || Sbjct 375485 CCTGAATTAGGAGATAAATTTTCATCAAGACATGGTC-AAAAAGGTGTTTGTGGTTTAAT 375543 Query 193058 TTATTCACAAGAAGATATGCCATTTACAACTTCAGGTATGGTACCAGATATTATTATTAA 193117 | | ||||||||||||||||||||| | ||||| || |||||||||||||| || Sbjct 375544 TGTTAACCAAGAAGATATGCCATTTACAGATCTTGGTATTGTTCCAGATATTATTATGAA 375603 Query 193118 TCCAAATTGTA 193128 ||| || ||| Sbjct 375604 CCCACATGGTA 375614 >seq603 Length=19817 Score = 86.0 bits (94), Expect = 8e-12 Identities = 156/222 (70%), Gaps = 6/222 (3%) Strand=Plus/Plus Query 193323 ACTGGTaaaaaaaTTGAAAATAAAATTTTTATAGGGCCAACTTATTACCATCGTCTTAAA 193382 || ||||| ||| || || | |||| || | || |||||||||||||| ||| | || Sbjct 11716 ACAGGTAAGAAACTTCAAGCTCAAATCTTCCTTGGTCCAACTTATTACCAACGTTTAAAG 11775 Query 193383 CACATGGTTAAGGATAAAATGCATGCTAGAAGTCATGGGCAAGTGACTACT--TTACATC 193440 || ||||| | ||||| || || | | || ||| | ||| || | | |||| || Sbjct 11776 CATATGGTCGATGATAAGATTCACAGTCGTGCTCGTGGTCCAGT-ACAAATTCTTAC-TC 11833 Query 193441 GACAACCAAATTGTGGTCGTTCTCAAGGTGGAGGTTTAAGATTTGGAGAAATGGAAAAAG 193500 | |||||| ||| | |||| | ||| ||| | | || || ||||||||||| | Sbjct 11834 GTCAACCAGTCGAAGGTAGATCTCGTGATGGTGGTCTTCGTTTCGGTGAAATGGAAAAGG 11893 Query 193501 ACTGTAT-TTTAGTCCATGGTGCTACTCAATTCTTAAATGAA 193541 | ||||| ||||| || |||||| |||||||||| || ||| Sbjct 11894 ATTGTATGATTAGT-CACGGTGCTGCTCAATTCTTGAAGGAA 11934 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628518189404160