Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Piromyces_20sp._20E2_20[genbank_20GCA_5F002157105.1_202017-05-24] 1,656 sequences; 71,019,055 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq579 203 6e-47 seq187 150 4e-31 seq45 107 4e-18 seq97 93.3 8e-14 >seq579 Length=22240 Score = 203 bits (224), Expect = 6e-47 Identities = 189/239 (79%), Gaps = 1/239 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | ||||| ||||||||||| || |||||||| || || || || ||||||| Sbjct 1153 TACCACCACGTAAACGAAGAACTAAGTGAAGGGTAGATTCCTTTTGGATGTTGTAATCAG 1212 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| | | ||| ||||||| |||||| ||||| || || || | ||||||||| || | Sbjct 1213 AAAGAGTACGACCATCTTCTAATTGTTTACCAGCGAAAATAAGACGTTGTTGATCAGGTG 1272 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||| ||||||||||| || ||||| ||||||||||| |||||| || ||| | Sbjct 1273 GAATACCTTCTTTATCTTGAATTTTGGCTTTAACATTTTCAATAGTATCAGAAGATTCAA 1332 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATTATATTT 82820 |||| | ||| || ||||| || || | ||||||||||| || |||||| || ||||| Sbjct 1333 CTTCAAGAGTGATAGTCTTACCAGTAAGAGTCTTTACAAAGATTTGCATT-TTTTATTT 1390 Score = 179 bits (198), Expect = 7e-40 Identities = 165/209 (79%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 82602 ACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCT 82661 ||||| || || |||||||| || || || || |||||||| ||| | | ||| |||||| Sbjct 945 ACTAAATGAAGTGTAGATTCCTTTTGAATGTTGTAATCAGAAAGAGTACGACCATCTTCT 1004 Query 82662 AGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGA 82721 | |||||| ||||| || || || | |||||| ||||| || || ||||| ||||||||| Sbjct 1005 AATTGTTTACCAGCGAAAATAAGACGTTGTTGGTCTGGTGGAATACCTTCTTTATCTTGA 1064 Query 82722 ATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTG 82781 || || ||||| ||||||||||| |||||| || ||||||||| ||||| || || || Sbjct 1065 ATTTTGGCTTTAACATTTTCAATGGTATCAGAAGATTCTACTTCTAAAGTGATAGTTTTA 1124 Query 82782 CCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || || || || ||||| || ||||| Sbjct 1125 CCAGTTAAAGTTTTAACAAAGATTTGCAT 1153 >seq187 Length=118869 Score = 150 bits (166), Expect = 4e-31 Identities = 164/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 82593 AAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTA 82652 ||||| ||||| | ||| ||||||||||| || || || || || ||||| ||| | | | Sbjct 41180 AAACGAAGAACAAGGTGGAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAAAGAGTACGA 41121 Query 82653 CCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCC 82712 || ||||||| ||| || || |||||||| || | |||||| ||||| || || |||||| Sbjct 41120 CCATCTTCTAATTGCTTACCGGCAAAGATAAGACGTTGTTGGTCTGGTGGGATACCTTCC 41061 Query 82713 TTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTT 82772 |||||||| ||||| ||||| |||||||| || || || | ||| || || | || Sbjct 41060 TTATCTTGGATCTTAGCTTTGACATTTTCGATAGTGTCGGAGGATTCGACCTCAAGGGTA 41001 Query 82773 ATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || ||||| || || | || || || || || ||||| Sbjct 41000 ATGGTCTTACCCGTAAGGGTTTTGACGAAGATTTGCAT 40963 >seq45 Length=243278 Score = 107 bits (118), Expect = 4e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 82623 TTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATT 82682 || || || || || ||||| ||| | | | ||||||| ||| || ||||| |||||| Sbjct 63453 TTTTGGATGTTGTAGTCAGAGAGAGTACGGTCATCTTCTAATTGCTTACCAGCGAAGATT 63512 Query 82683 AGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCA 82742 | | |||||||||||| || || |||||||| ||||| ||||| |||||||| || Sbjct 63513 AAACGTTGTTGATCTGGTGGAATACCTTCCTTTTCTTGGATCTTGTTCTTTACATTAACA 63572 Query 82743 ATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAAT 82802 || | || || ||| || || | || || ||||| || || | ||||||||||| Sbjct 63573 ATGCTGTCGGAAGATTCAACCTCAAGGGTGATAGTCTTTCCGGTAAGGGTCTTTACAAAA 63632 Query 82803 ATCTGCATTATT 82814 |||| ||||| Sbjct 63633 ATCTATTTTATT 63644 >seq97 Length=178188 Score = 93.3 bits (102), Expect = 8e-14 Identities = 160/227 (70%), Gaps = 8/227 (4%) Strand=Plus/Minus Query 82623 TTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATT 82682 || || || || || ||||| || |||| | ||||||| |||||| || || || ||| Sbjct 109207 TTTTGGATGTTGTAGTCAGAAAGGGTTCTGTCATCTTCTAATTGTTTACCGGCGAAAATT 109148 Query 82683 AGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCA 82742 | | |||||| ||||| || || |||||||| ||||||||||| || ||||| || Sbjct 109147 AAACGTTGTTGGTCTGGTGGGATACCTTCCTTTTCTTGAATCTTGTTCTTAACATTGACA 109088 Query 82743 ATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAAT 82802 || | || || || || || | ||||| ||||| || || | || || || || Sbjct 109087 ATACTGTCGGAAGACTCAACCTCAAGGGTTATAGTCTTTCCAGTAAGGGTTTTGACGAAA 109028 Query 82803 ATCTGCATT-ATTATATTTTTCTACTAAACACGTGTATTAATGTTAT 82848 |||| ||| ||| ||||| | || |||| | ||||||| |||| Sbjct 109027 ATCT--ATTGATTTTATTTAT-TA-TAAAAA---TTATTAATATTAT 108988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981806368081384