Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Piromyces_20sp._20E2_20[genbank_20GCA_5F002157105.1_202017-05-24] 1,656 sequences; 71,019,055 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq73 172 1e-37 seq303 127 5e-24 seq129 89.7 1e-12 seq13 89.7 1e-12 >seq73 Length=205935 Score = 172 bits (190), Expect = 1e-37 Identities = 311/446 (70%), Gaps = 33/446 (7%) Strand=Plus/Minus Query 279015 ATAAGCTAA--CAAAT----AAAAAGAATGATGG-CA-AGAAGACCAATAAATTATATGG 279066 |||||| || ||||| ||||||| ||||| || | |||| ||| || || | || Sbjct 184629 ATAAGCAAAGTCAAATGTTAAAAAAGACAGATGGTCACAAAAGATCAAGAATTTCT--GG 184572 Query 279067 TATTCCAAAACTTGATGATGCAAACTGGGCTGGAGGTCGTAAATCTCAA--GAATGTGCT 279124 |||||||||| | |||||||| || ||||| || || |||| || |||| | Sbjct 184571 TATTCCAAAATTAGATGATGCGAATAATGCTGGTA--CGAAACATTCAAAAGATTGTGTT 184514 Query 279125 TTATTTCTTACTGAGGGAGATTCTGCTGCTACATTTGCGATTGCTGGTTTATCTGTTATT 279184 ||| ||||||| || || ||||||||| | || || ||| ||| || |||| || Sbjct 184513 TTAATTCTTACGGAAGGGGATTCTGCTAAAGCCTTAGCTATTAGTGGATTGACTGTAGTT 184454 Query 279185 GGTCGTGATAAATATGGCGTATTTCCTTTAAGAGGTAAAGTAATTAATGCTCGTGATAAA 279244 ||||||||||| ||||| |||||||| ||| | |||||| | | |||| ||||||| Sbjct 184453 GGTCGTGATAATTATGGTGTATTTCCATTACGTGGTAAAATGTTAAATGTTCGTGAT-GC 184395 Query 279245 ATCACAACACAGGCTGGTTTAAAGCAAGTAAATGCTAATGCTGAATTGATT--AATTTAA 279302 ||||| |||| | | | | | |||||||||| | | | |||| | Sbjct 184394 TTCACA-------------TAAATCTA-TTATGGATAATGCTGAAGTTAGTGCAATT--A 184351 Query 279303 AACAAATATTGGGATTAGAGCAAGGTAAAAAATACAAAGATACATCAAGTTTACGATATG 279362 ||||||| | || ||| | || |||||| || | | |||| |||||| |||||| Sbjct 184350 AACAAATTCTTGGTTTACAACATGGTAAAGTTTATACAAATACTGATAGTTTAAGATATG 184291 Query 279363 GTAAAATTATTATTTTGACAGACCAAGATTTAGATGGAAGTCACATTAAAGGATTAATAC 279422 || | ||||| || |||| || |||||| |||||| ||||||||| |||||| || Sbjct 184290 GTCATATTATGATCATGACGGATCAAGATACAGATGGTTCTCACATTAAGGGATTAGTAA 184231 Query 279423 TTAATTGGGTTGATACTTTCTGGCCA 279448 |||||| | ||| |||||||||| Sbjct 184230 TTAATTTCTTGGATCATTTCTGGCCA 184205 Score = 163 bits (180), Expect = 7e-35 Identities = 365/537 (68%), Gaps = 12/537 (2%) Strand=Plus/Minus Query 279806 GAATTTATTGATAAAGAACTGATCCATTTTTCTAATTATGATGTTCATCGTTCTATTCC- 279864 ||||||||| ||||||| | || || ||||||| |||||| |||||||||||| Sbjct 183832 GAATTTATTAATAAAGAGTTAATTCAATTTTCTATGGCAGATGTTATTCGTTCTATTCCA 183773 Query 279865 TCATTTAATGGATGGTTTGAAACCTTCACAGCGTAAGATTATATTCAGTTGTTTCAAAAG 279924 ||| ||| | |||||||| || ||| || | || ||||| | ||||||| ||||| Sbjct 183772 TCA-TTAGTTGATGGTTTTAAGCCTGGTCAAAGAAAAATTATGTATGGTTGTTTTAAAAG 183714 Query 279925 AAAATTGGTAAAGGAAATTCGTGTTGCTCAGTTAGCAGGTTATGTTTCAGAACATGCAGG 279984 ||| || || |||||| |||||||| | | |||||| || | ||||| | | Sbjct 183713 AAATTTAACCAATGAAATTAAGGTTGCTCAACTTACTGGTTATATTGCTGAACACACTGC 183654 Query 279985 TTATCATCACGGTGAAGCGTCTCTTCAAGGTGCTATTGTAGGTCTTGCCCAAGATTTTAT 280044 |||||| || |||||| |||| ||||||||| | | || ||||||||| | Sbjct 183653 TTATCACCATGGTGAACAAAGTCTTTCTCTTGCTATTGTTAATTTAGCACAAGATTTTGT 183594 Query 280045 GGCTTCAAACAA-CTTAAATCTGCTTTCACCAAATGGTCAATTTGGTTCTCGTATTCACA 280103 | | || || || || | | ||||||||||||||||||| | ||| | || Sbjct 183593 TGGTAGTAATAATGTTCCAT-TATTAGTACCAAATGGTCAATTTGGTACACGTTTACAAG 183535 Query 280104 ATGGAAAAGATCATGGTAGTGCTCGTTACATACATACATGTCTTTCAGATA---TTAC-A 280159 |||||| ||| | |||||||||| ||| | || || | || || |||| | Sbjct 183534 GTGGAAAGGATGCCGCCAGTGCTCGTT--ATATTTTCA-CTCAATTAGCTAAAGTTACTA 183478 Query 280160 AACAAGTTATTTATCAATTCTGATAATGCTTCATTAGAGTGGCTAGAGGATGATGGTCTT 280219 | | || |||| || |||||| || | | || | || | |||||||||| Sbjct 183477 GATTAATT-TTTAAGAAATCTGATGATAATATTCTTGAATATTTAAATGATGATGGTCAA 183419 Query 280220 GCTATTGAACCAACATATTATGCTCCAATTATCCCTATGATTCTTGTTAATGGTGCTCAA 280279 |||||||||| || ||| ||||||| | || ||| ||||| | ||||||||| || Sbjct 183418 ATGATTGAACCAAAATGGTATATTCCAATTTTACCCATGGTTCTTATAAATGGTGCTGAA 183359 Query 280280 GGAATTGGAACAGGTTATTCTACATCTATCCCAATGTACAATCCAATTGATATTATA 280336 || ||||| || |||||| ||| ||| |||| | ||||| | ||| || || Sbjct 183358 GGTATTGGTACTGGTTATAGTACTAATATACCAAATTTTAATCCTAGAGATGTTGTA 183302 >seq303 Length=76964 Score = 127 bits (140), Expect = 5e-24 Identities = 469/719 (65%), Gaps = 47/719 (7%) Strand=Plus/Plus Query 304886 TTACAATATCATATTGCAACATTAATGGATAATGAAATTGCTGGAATTATGC----AGGC 304941 ||||||| |||| |||| ||| | ||||||||||| || || || ||||| || | Sbjct 72618 TTACAATTTCATGTTGCTACACTTATGGATAATGATATGGCAGG---TATGCCTCAAGCC 72674 Query 304942 ATCTCAAAGATCTGGCAGACCTTTAAAGGGTATTAGGCAACGCATTAAAGGTAAAGAGGG 305001 || |||| | ||| ||||||||||| | ||||| ||| | || |||||||| || Sbjct 72675 AT-GCAAAAAAGTGGTAGACCTTTAAAAGCAATTAGAGCACGTTTGAAGGGTAAAGAAGG 72733 Query 305002 TCGTATTCGAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTGCAAGAAGTGTAATCAC 305061 | | ||||| |||||| ||||| || |||||||||||| |||| | | || || || Sbjct 72734 TAGAATTCGTAATAATCTTATGGGTAAGCGTGTTGATTTTTCTGCACGTACCGTTATTAC 72793 Query 305062 ACCTGATTCTCAAATTAGTCTTCATGAATTAGGAGTTCCAATTGAA--ATTGCTTTAAAA 305119 |||| || | ||| | | || || |||| || |||| ||| ||||| ||| Sbjct 72794 TGGTGATCCTAATATTTCTATCGATCAAGTAGGTGTACCAA--GAAGTATTGCAAGAAAT 72851 Query 305120 CTAACATTTCCAGAGAAAGTTA-ACGAGAAAAATATTAAACATTTGAGACGTTGTGTTCT 305178 |||| || ||||| | ||| | || | | |||||| | | | || |||| Sbjct 72852 TTAACTTTCCCAGAAACAGTAACACCA-TATAATATTGATGAACTTCAACAACTTGTTAA 72910 Query 305179 TAATGG---AAATAGCAAGTATCCAGGTGCTCGTGCTGTTATAAAACACAA--GCAAAAG 305233 |||||| |||| || ||||||||||| || | ||| | || | | || Sbjct 72911 TAATGGTCCAAAT---GAGCATCCAGGTGCTAAATACGTATTTAAAGATAATGGTGATAG 72967 Query 305234 AAGACAATATCTTTGAACCAT-ATCGATTTAAAACAATTCAGTAAAATGCTTGAAATTAA 305292 ||| |||||| | | || | || |||| | | || | Sbjct 72968 -----AATTGATTTGAAATTTGCTAGAAGTGGAAGTGTTCATT-------TACAAGTAGG 73015 Query 305293 TGATATTGTTATCAGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATC 305352 | ||| || | ||| | ||||| ||||| ||| | |||||| | ||||| || Sbjct 73016 TTATAAGGTAGAACGTCATATTAATGATGGTGATTTAGTTATTTTCAATCGTCAACCTTC 73075 Query 305353 ACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTAT-CTGGATT-GACATTT 305410 | | || |||||| |||||||| ||| ||||| | || |||| | ||| || || Sbjct 73076 ATTACACAAAATGAGTATGATGGGTCACAAAGTTAGAG--TTATGCCATATTCCACTTTC 73133 Query 305411 CGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAAT 305470 || |||||| || || | | | || |||||||| ||||||||||| |||||||||||| Sbjct 73134 CGTTTAAATTTATCTGTTACTTCTCCATATAATGCTGATTTTGATGGTGATGAAATGAAT 73193 Query 305471 ATGCATGTACCTCAATCAAAGGTTACAATGACTGAATTATCAGAAATATGTTCTGTATCA 305530 | || || ||||||||| | | || | ||||| | |||| | ||| ||| || Sbjct 73194 TTACACGTTCCTCAATCATATGAAACTAGAGCTGAAATTCAAGAACTTTGTATGGTACCA 73253 Query 305531 AAACTTATCATTTCTCC---TGCT-ATAAATGCTCCAATAATCGAATTTGTACAAGATA 305585 |||| || |||| || ||| ||||| ||| | || | |||||||||||| Sbjct 73254 AAACAAATTGTTTCACCACAAGCTAATAAA----CCAGTTATGGGTATTGTACAAGATA 73308 >seq129 Length=154512 Score = 89.7 bits (98), Expect = 1e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 167205 ATTTCAAAAGAGCACCTAAAATCTTTATTAATTATCATTACACCACCAGCATTATCGAAT 167264 |||||||| || || ||||||| ||| | | ||| ||| ||||| |||||| ||| Sbjct 122777 ATTTCAAAGGAACAAAGTAAATCTTCATTTACAAGCATAACAGCACCATTATTATCAAAT 122836 Query 167265 TCATTCGCATAATTTGGTGCTGAAAATACAGTAACTAATTTACGATTGAAAAATAATTCA 167324 ||| |||||||||||| |||||||||||| || | | ||| ||| |||||| Sbjct 122837 TCACCACAATAATTTGGTGCACTAAATACAGTAACCAAAATTCTATTTCCAAAGAATTCA 122896 Query 167325 TAACCATCTTCAACAAC 167341 |||||||| || ||||| Sbjct 122897 TAACCATCCTCCACAAC 122913 >seq13 Length=428742 Score = 89.7 bits (98), Expect = 1e-12 Identities = 91/116 (78%), Gaps = 2/116 (2%) Strand=Plus/Plus Query 167239 TCATTACACCACCAGCATTATCGAATTCATTCGCA-TAATTTGGTGCTGAAAATACAGTA 167297 |||| | | | ||||||||||| |||||| | || |||||||||||||| || | ||| Sbjct 88752 TCATCATAGCCCCAGCATTATCAAATTCA-CCACAGTAATTTGGTGCTGAGAACAATGTA 88810 Query 167298 ACTAATTTACGATTGAAAAATAATTCATAACCATCTTCAACAACTTCATGGGCACG 167353 ||||||| ||| || ||| ||||||||||| ||||| || |||| || ||||| Sbjct 88811 ACTAATTGACGTTTTGCAAAGAATTCATAACCGTCTTCTACGACTTGGTGAGCACG 88866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186787618799416