Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Piromyces_20sp._20E2_20[genbank_20GCA_5F002157105.1_202017-05-24] 1,656 sequences; 71,019,055 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq579 178 1e-39 seq187 161 1e-34 seq45 140 4e-28 seq97 125 8e-24 >seq579 Length=22240 Score = 178 bits (196), Expect = 1e-39 Identities = 176/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||| || || | || || || ||||| ||| | || || || || | Sbjct 1153 ATGCAAATCTTTGTTAAAACTTTAACTGGTAAAACTATCACTTTAGAAGTAGAATCTTCT 1094 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| |||| | || || |||||||| || || || || ||||| |||||||| Sbjct 1093 GATACCATTGAAAATGTTAAAGCCAAAATTCAAGATAAAGAAGGTATTCCACCAGACCAA 1034 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| ||||| |||||||| ||| | || |||| |||||| || | || || || Sbjct 1033 CAACGTCTTATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTTTCTGATTACAAC 974 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 | ||||||||||| || |||||| ||||||| |||||||| |||||| Sbjct 973 ATTCAAAAGGAATCTACACTTCATTTAGTCTTACGTCTTCGTGGTGGA 926 Score = 178 bits (196), Expect = 1e-39 Identities = 176/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||||||||| ||||| ||||| || |||||||| |||||||| ||||| || Sbjct 1382 AATGCAAATCTTTGTAAAGACTCTTACTGGTAAGACTATCACTCTTGAAGTTGAATCTTC 1323 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| |||| |||| | || || |||||||| || || || || ||||| || || || Sbjct 1322 TGATACTATTGAAAATGTTAAAGCCAAAATTCAAGATAAAGAAGGTATTCCACCTGATCA 1263 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 || ||||| ||||| |||||||| ||| | || |||| |||||| || | || || || Sbjct 1262 ACAACGTCTTATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTTTCTGATTACAA 1203 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||||||||||| || ||||| |||| | ||| | || ||||| Sbjct 1202 CATCCAAAAGGAATCTACCCTTCACTTAGTTCTTCGTTTACGTGGTGG 1155 >seq187 Length=118869 Score = 161 bits (178), Expect = 1e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| ||||| || ||||| || ||||| ||||| |||||||| || || Sbjct 40963 ATGCAAATCTTCGTCAAAACCCTTACGGGTAAGACCATTACCCTTGAGGTCGAATCCTCC 41022 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | |||| | || ||||| || || || ||||| || || || |||||||| Sbjct 41023 GACACTATCGAAAATGTCAAAGCTAAGATCCAAGATAAGGAAGGTATCCCACCAGACCAA 41082 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| || ||||| ||||||||| | || |||| |||||| || | ||||| || Sbjct 41083 CAACGTCTTATCTTTGCCGGTAAGCAATTAGAAGATGGTCGTACTCTTTCTGACTACAAC 41142 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||||||||||| ||||| || || || | ||| | || ||||| Sbjct 41143 ATCCAAAAGGAATCTACTCTCCACCTTGTTCTTCGTTTACGTGGTGG 41189 >seq45 Length=243278 Score = 140 bits (154), Expect = 4e-28 Identities = 156/207 (75%), Gaps = 5/207 (2%) Strand=Plus/Minus Query 27394 AATATTACTAT--AATGCAA---ATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTC 27448 ||||||| ||| ||| || || ||||| ||||| |||||||| |||||||| || | Sbjct 63657 AATATTATTATGAAATAAAATAGATTTTTGTAAAGACCCTTACCGGAAAGACTATCACCC 63598 Query 27449 TTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGG 27508 |||||||||| || || ||||||| ||| | ||| || || || || ||||| | Sbjct 63597 TTGAGGTTGAATCTTCCGACAGCATTGTTAATGTAAAGAACAAGATCCAAGAAAAGGAAG 63538 Query 27509 GAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTA 27568 | ||||| ||||| || || ||| |||| || |||||||||||| | || ||||| |||| Sbjct 63537 GTATTCCACCAGATCAACAACGTTTAATCTTCGCTGGTAAGCAATTAGAAGATGACCGTA 63478 Query 27569 CCCTAGCAGACTATAATGTCCAAAAGG 27595 | || | ||||| || ||||||||| Sbjct 63477 CTCTCTCTGACTACAACATCCAAAAGG 63451 >seq97 Length=178188 Score = 125 bits (138), Expect = 8e-24 Identities = 138/184 (75%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 27412 ATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGC 27471 || || ||||| || ||||| || |||||||| || |||||||||||||| || || Sbjct 109026 ATTTTCGTCAAAACCCTTACTGGAAAGACTATAACCCTTGAGGTTGAGTCTTCCGACAGT 109085 Query 27472 ATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGT 27531 |||| ||| | ||| || ||||| || ||||| || || || |||||||| || ||| Sbjct 109086 ATTGTCAATGTTAAGAACAAGATTCAAGAAAAGGAAGGTATCCCACCAGACCAACAACGT 109145 Query 27532 CTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAA 27591 ||||||| || ||||| ||| | || ||||| | ||||| | ||||| || ||||| Sbjct 109146 TTAATTTTCGCCGGTAAACAATTAGAAGATGACAGAACCCTTTCTGACTACAACATCCAA 109205 Query 27592 AAGG 27595 |||| Sbjct 109206 AAGG 109209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570298594574720