Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Piromyces_20sp._20E2_20[genbank_20GCA_5F002157105.1_202017-05-24] 1,656 sequences; 71,019,055 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq579 111 1e-19 seq97 100 2e-16 seq187 87.8 1e-12 >seq579 Length=22240 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| || || ||||| || || |||||||||||||| ||||| ||| Sbjct 927 CCACCACGAAGACGTAAGACTAAATGAAGTGTAGATTCCTTTTGAATGTTGTAATCAGAA 986 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | ||||| | ||||||||| || || || | ||| |||||||| || || Sbjct 987 AGAGTACGACCATCTTCTAATTGTTTACCAGCGAAAATAAGACGTTGTTGGTCTGGTGGA 1046 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCAC 34658 | || || || ||| ||| ||| | |||||| | ||| || || || || Sbjct 1047 ATACCTTCTTTATCT-TGAATTTTGGCTTTAACATTTTCAATGGTATCAGAAGATTCTAC 1105 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| | || || |||||||| ||||| ||||| ||||| || ||||| Sbjct 1106 TTCTAAAGTGATAGTTTTACCAGTTAAAGTTTTAACAAAGATTTGCAT 1153 >seq97 Length=178188 Score = 100 bits (110), Expect = 2e-16 Identities = 136/187 (73%), Gaps = 2/187 (1%) Strand=Plus/Minus Query 34517 CCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATA 34576 ||||||| ||||| || || ||||| |||| || ||||| | |||||||||||| || | Sbjct 109209 CCTTTTGGATGTTGTAGTCAGAAAGGGTTCTGTCATCTTCTAATTGTTTACCGGCGAAAA 109150 Query 34577 TTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT- 34635 ||||||| |||||||| || || | || ||||| ||| ||||| | | ||||| | Sbjct 109149 TTAAACGTTGTTGGTCTGGTGGGATACCTTCCTTTTCTTGAATCTTGT-TCTTAACATTG 109091 Query 34636 AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACA 34695 | ||| |||| ||| || || | |||||| || || || || | ||||| || Sbjct 109090 ACAATACTGTCGGAAGACTCAACCTCAAGGGTTATAGTCTTTCCAGTAAGGGTTTTGACG 109031 Query 34696 AAAATCT 34702 ||||||| Sbjct 109030 AAAATCT 109024 >seq187 Length=118869 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 |||||||| |||||||| ||||| || || ||||| || || | ||||| | ||| Sbjct 41165 TGGAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAAAGAGTACGACCATCTTCTAATTGC 41106 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623 ||||||||||| || | ||| |||||||| || || | || ||||| ||| |||||| Sbjct 41105 TTACCGGCAAAGATAAGACGTTGTTGGTCTGGTGGGATACCTTCCTTATCTTGGATCTTA 41046 Query 34624 TGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTT 34683 ||| | | || ||||| | || || || | ||| || || ||||| || Sbjct 41045 GCTTTGACATTTTCGATAGTGTCGGAGGATTCGACCTCAAGGGTAATGGTCTTACCCGTA 40986 Query 34684 AACGTTTTCACAAAAATCTGCAT 34706 | ||||| || || || ||||| Sbjct 40985 AGGGTTTTGACGAAGATTTGCAT 40963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314723247969848