Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Piromyces_20sp._20E2_20[genbank_20GCA_5F002157105.1_202017-05-24] 1,656 sequences; 71,019,055 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq187 167 6e-36 seq579 143 6e-29 seq45 113 1e-19 seq97 89.7 1e-12 seq88 86.0 1e-11 >seq187 Length=118869 Score = 167 bits (184), Expect = 6e-36 Identities = 164/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || |||||||||||||| ||||| ||||||| ||||| || | | ||| | |||||| Sbjct 41174 AGAACAAGGTGGAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAAAGAGTACGACCATCT 41115 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 |||| ||||| || || |||||||| ||||||||||| || || ||||||||||| ||| Sbjct 41114 TCTAATTGCTTACCGGCAAAGATAAGACGTTGTTGGTCTGGTGGGATACCTTCCTTATCT 41055 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| || ||| |||||| ||||| |||| ||| || || | || || ||| Sbjct 41054 TGGATCTTAGCTTTGACATTTTCGATAGTGTCGGAGGATTCGACCTCAAGGGTAATGGTC 40995 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || ||||| | ||||| | ||| | |||||| Sbjct 40994 TTACCCGTAAGGGTTTTGACGAAGATTTGCAT 40963 >seq579 Length=22240 Score = 143 bits (158), Expect = 6e-29 Identities = 167/223 (75%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | | ||| | || || || ||||| ||||| | |||||||| | | ||| Sbjct 932 ACGAAGACGTAAGACTAAATGAAGTGTAGATTCCTTTTGAATGTTGTAATCAGAAAGAGT 991 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||||| || || |||||||| ||||| ||||||||||| || |||||||| Sbjct 992 ACGACCATCTTCTAATTGTTTACCAGCGAAAATAAGACGTTGTTGGTCTGGTGGAATACC 1051 Query 225612 TTCCTTGTCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTA 225670 ||| || ||||| || ||| || || ||| ||| ||||| || || | ||| || |||| Sbjct 1052 TTCTTTATCTTGAAT-TTTGGCTTTAACATTTTCAATGGTATCAGAAGATTCTACTTCTA 1110 Query 225671 ACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 | ||||| || || || || |||||||| | || | |||||| Sbjct 1111 AAGTGATAGTTTTACCAGTTAAAGTTTTAACAAAGATTTGCAT 1153 Score = 134 bits (148), Expect = 3e-26 Identities = 161/216 (75%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| || || ||||| ||||||| |||||||| | | ||| | |||||| Sbjct 1170 AGAACTAAGTGAAGGGTAGATTCCTTTTGGATGTTGTAATCAGAAAGAGTACGACCATCT 1229 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 |||| || || |||||||| ||||| |||||||| || || ||||||||||| || ||| Sbjct 1230 TCTAATTGTTTACCAGCGAAAATAAGACGTTGTTGATCAGGTGGAATACCTTCTTTATCT 1289 Query 225622 TGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 || || ||| || || ||| ||| || || || || | ||| || || | ||||| || Sbjct 1290 TGAAT-TTTGGCTTTAACATTTTCAATAGTATCAGAAGATTCAACTTCAAGAGTGATAGT 1348 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||| || || | ||| |||| || | ||||||||| Sbjct 1349 CTTACCAGTAAGAGTCTTTACAAAGATTTGCATTTT 1384 >seq45 Length=243278 Score = 113 bits (124), Expect = 1e-19 Identities = 130/175 (74%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585 ||||||| ||||| || | | ||| | ||||||||| ||||| ||||||||||| Sbjct 63453 TTTTGGATGTTGTAGTCAGAGAGAGTACGGTCATCTTCTAATTGCTTACCAGCGAAGATT 63512 Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645 | |||||||| || || |||||||||||||| ||||||||||| | ||| ||| | Sbjct 63513 AAACGTTGTTGATCTGGTGGAATACCTTCCTTTTCTTGGATCTTGTTCTTTACATTAACA 63572 Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTA 225700 ||| |||| || | ||| || || | ||||| ||||| || || | || |||| Sbjct 63573 ATGCTGTCGGAAGATTCAACCTCAAGGGTGATAGTCTTTCCGGTAAGGGTCTTTA 63627 >seq97 Length=178188 Score = 89.7 bits (98), Expect = 1e-12 Identities = 127/179 (71%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585 ||||||| ||||| || | | ||||| ||||||||| || || || ||||| || Sbjct 109207 TTTTGGATGTTGTAGTCAGAAAGGGTTCTGTCATCTTCTAATTGTTTACCGGCGAAAATT 109148 Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645 | ||||||||||| || || ||||||||||| ||||| ||||| | ||| ||| | Sbjct 109147 AAACGTTGTTGGTCTGGTGGGATACCTTCCTTTTCTTGAATCTTGTTCTTAACATTGACA 109088 Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAA 225704 || |||| || | || || || | || || ||||| || || | ||||| | ||| Sbjct 109087 ATACTGTCGGAAGACTCAACCTCAAGGGTTATAGTCTTTCCAGTAAGGGTTTTGACGAA 109029 >seq88 Length=189696 Score = 86.0 bits (94), Expect = 1e-11 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 4471 AATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCT 4530 || ||||||||||| || || || || | |||||| || ||||| ||||| |||||||| Sbjct 67974 AAGATTTGACCATCTGTGATTGAAATGATATTTGTTGGAATATAGGCAGATACATCACCA 68033 Query 4531 GCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCA 4575 || ||||| |||| |||||| || |||| ||| ||||| ||| Sbjct 68034 CCTAAAGTTTCTACAATAGGTAATGCAGTTAATGAACCACCTCCA 68078 Score = 84.2 bits (92), Expect = 5e-11 Identities = 80/101 (79%), Gaps = 1/101 (1%) Strand=Plus/Minus Query 5022 CAATACCTTGCCCCATACACAGGTTGTGTTATAGGAGAATATTTTAGAGATAATGGTAAA 5081 ||||||||||| ||||| |||||||| ||| || ||||| | | | |||||||||| Sbjct 68381 CAATACCTTGCACCATATGCAGGTTGTACTATGGGTGAATACTATCGTGATAATGGTATG 68322 Query 5082 CATGCTTTAATCATCTACGATGATTTAAGTAAACAATTCAA 5122 ||||| || || || || |||||||||| |||| |||||| Sbjct 68321 CATGCATTGATTATTTATGATGATTTAACAAAAC-ATTCAA 68282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192505897469264