Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoclosmatium_20globosum_20[genbank_20GCA_5F002104985.1_202017-04- 20] 437 sequences; 57,018,351 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq155 118 2e-21 seq2 118 2e-21 seq157 93.3 9e-14 >seq155 Length=55617 Score = 118 bits (130), Expect = 2e-21 Identities = 134/177 (76%), Gaps = 2/177 (1%) Strand=Plus/Plus Query 319011 ATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAGATGATCCTCGATGTGGTGGAA 319070 |||||||||||| | || | ||| || ||||| |||||||| | || | ||||||||| Sbjct 38512 ATAACGCCATTGCAAGTATTTGTTTGGAGTCATATCAAGATGTTGTTCCAAGTGGTGGAA 38571 Query 319071 AGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATGCTTCCAAACACTACC-GATGG 319129 ||||||||| || |||||| ||| ||||| ||||| || ||||| ||| | || || | Sbjct 38572 AGCATGCTGAGCTACGTAACCAACACGCAAGTTTGGGTGTTTCCACACAGTTCCAGACTG 38631 Query 319130 TGGCTTCCATTTGTCCCGTGAGCACCTTAATGAGGGTGCTTTTCCCCGCACCGTTTT 319186 |||| | | || ||| || || || ||||| || ||||| |||||||| |||| Sbjct 38632 TGGC-TGAACTTCACCCAAAAGGACTTTGATGAGTGTACTTTTACCCGCACCATTTT 38687 >seq2 Length=712398 Score = 118 bits (130), Expect = 2e-21 Identities = 134/177 (76%), Gaps = 2/177 (1%) Strand=Plus/Plus Query 319011 ATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAGATGATCCTCGATGTGGTGGAA 319070 |||||||||||| | || | ||| || ||||| |||||||| | || | ||||||||| Sbjct 388012 ATAACGCCATTGCAAGTATTTGTTTGGAGTCATATCAAGATGTTGTTCCAAGTGGTGGAA 388071 Query 319071 AGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATGCTTCCAAACACTACC-GATGG 319129 ||||||||| || |||||| ||| ||||| ||||| || ||||| ||| | || || | Sbjct 388072 AGCATGCTGAGCTACGTAACCAACACGCAAGTTTGGGTGTTTCCACACAGTTCCAGACTG 388131 Query 319130 TGGCTTCCATTTGTCCCGTGAGCACCTTAATGAGGGTGCTTTTCCCCGCACCGTTTT 319186 |||| | | || ||| || || || ||||| || ||||| |||||||| |||| Sbjct 388132 TGGC-TGAACTTCACCCAAAAGGACTTTGATGAGTGTACTTTTACCCGCACCATTTT 388187 >seq157 Length=558770 Score = 93.3 bits (102), Expect = 9e-14 Identities = 116/159 (73%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 230446 CTTATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATT 230505 || ||||| |||||| |||| | ||| | |||||||| |||||||| || ||| | || Sbjct 322456 CTGATTGGAATGAACTCTGACTTGATGAGCCAGTACATTGAATTCGTCGCAGACAGACTT 322397 Query 230506 TTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAG 230565 || ||| | | || | || | |||||| |||||||||||| || ||||| Sbjct 322396 TTGGTTTCTTTGGGCTGTCCTAAGCTCTACAACGTCGAGAACCCCTTTGACTTCATGGAT 322337 Query 230566 CTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAG 230604 ||||| || | ||||| |||||||||||||| || ||| Sbjct 322336 CTCATCTCCTTGCAAGGAAAGACCAACTTCTTTGAGAAG 322298 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057818077177310