Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoclosmatium_20globosum_20[genbank_20GCA_5F002104985.1_202017-04- 20] 437 sequences; 57,018,351 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq38 206 3e-48 seq13 206 3e-48 seq157 140 4e-28 >seq38 Length=108757 Score = 206 bits (228), Expect = 3e-48 Identities = 874/1362 (64%), Gaps = 29/1362 (2%) Strand=Plus/Plus Query 52953 CGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAA 53012 ||||||| || || | ||| |||||||| | ||||| |||||| | ||||||||| | Sbjct 86881 CGATGAATGCACCACGGTCAGCAGCCATGTCGATGATAACCTTTTGAGAAATTTCCCAGA 86940 Query 53013 TAGTTTTATAAACTCGCTTAATATCTTCTGGAA--GGTTTGTATTC--TGAATAGATCCA 53068 ||| || || | | ||| | ||| |||||| | || || | || | |||||| Sbjct 86941 CAGTCTTGTAGATACCCTTGAGATCAGCTGGAATAGCGCTG-ATGCGTTGGACTGATCCA 86999 Query 53069 CCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACT 53128 || | ||||| | ||||| || || |||||||| ||||| || | Sbjct 87000 TTCTCAGCAATAATACGGTTCTTCATGGTGTCGTTCCATAAACCAAGTTCGGTCAAGTCC 87059 Query 53129 CTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATA 53188 | | | |||||||| || | ||| ||||| || | | || | |||||||| ||| Sbjct 87060 TTCAACAAGTGCGGATTCACAATTTGGAATTCACCCGCAAGAACACGGCGAGTGTAGATA 87119 Query 53189 TTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTC 53248 || || || |||||||| | | |||| || || || | ||| |||| || |||||||| Sbjct 87120 TTGCTTGTGTACGGTTCAAAACACTCGTTGTTACCAAGAATCTGAGATGTCGATGCAGTT 87179 Query 53249 GGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGA 53308 ||||| || |||| ||| ||| |||| | |||||| | | ||| | ||| Sbjct 87180 GGCATTGGAGCCATCAACAAAGAGTTTCGGACACCGTACTTGGCCACCTTAGCGCGAAGA 87239 Query 53309 GGTTCCCAATTCCAAAGATCCGACG-GTACAA--CNNNNNNNNNNNNNNNTTGTAGAATA 53365 | ||||| | ||||| || || | ||| | | || | | | Sbjct 87240 GCATCCCAGT-CCAAA--TCAGAGTTGCTCAAATCAATGTTCCAAAGGTCTGGTTGCA-A 87295 Query 53366 CCGT--TACTGGCGTACGA--TCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAG 53421 | || | || | | | |||| | || || |||||| || || || || || | Sbjct 87296 CTGTCCTTTTGACATTGGGCTTCCTTCGTAAGTTGAGTATGGACCGTCTTTTTCGGCAAT 87355 Query 53422 TTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATC 53481 ||||| ||||| | ||| |||| || ||| |||| ||||||||||| || || || Sbjct 87356 CTCACACGAAGCCTCCACGGCAGCGTAGTACATGTTTTCAAAGATCTTCTTGTTCAGCTC 87415 Query 53482 TTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTG 53541 || ||| | | || |||||| | | || || || || || | |||||| Sbjct 87416 TTTCGCTCCTTCGGAGTCGAATGGAAGACGCATCTTGATGAAAGCATCGGCAAGTCCTTG 87475 Query 53542 AACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATA 53601 ||| |||| ||||||||||| || | | | || ||| | | || || | ||| || Sbjct 87476 AACTCCAAGACCGATAGGTCGGTGACGCATGTTTGAGTTCTTGGCCTCAATGACAGGGTA 87535 Query 53602 ATAATTAATATCTATAATTTTATTGAGGTTTCTGACAATTACTTTGACCACATCCTTCAG 53661 ||||||| || || || || || | ||| || || ||||| || | || Sbjct 87536 GAAATTAATGTCAATGATCTTGTTCAAGTTCTTGGTCATGACTTTAGTGACCTGGCGGAG 87595 Query 53662 TTTGAGAAAATC--AAATTGTCCATCTATTACAAACATG--TTCAATGCA-ATAGATGCC 53716 ||| ||| || || | ||| | | | |||| | | | || | | ||||| || Sbjct 87596 TTTCTCAAAGTCGTAAGTAGTCT-TGT-TCACAACAAAGGCTGGAAGGGAGATAGAAGCA 87653 Query 53717 AGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTA 53776 || ||||| ||||| | || | || | | || | | || || |||||||| ||| Sbjct 87654 AGGTTACAGACGGCGATTTCGTCAGGAGAAGTGTACTCGACGATTTCTGTGCAAAGGTTA 87713 Query 53777 CTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAA 53836 || ||||||||||| || || || ||||| ||| ||| ||||||| ||||| || || Sbjct 87714 CTGCACTTGATGGTGCCCAAGTTCTGTTGGTTAGACTTGCTGTTACAGGCATCTTTGTAC 87773 Query 53837 AGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACGACACGA 53896 | ||| |||| |||||||| || | || || || ||||| || | ||| | || Sbjct 87774 AACATGTATGGGGTACCAGTCTCGGTTTGAGACTCAATAATGGCGTACCAAAGCTTCTGA 87833 Query 53897 GCCTTTATTA-TAGATTTG-TATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCAA 53954 ||||| || | | | | | | |||| | ||| ||| | ||| | | ||||| Sbjct 87834 GCCTTGATAACTTTACGGGCCAACCCTTT--GCGTTCATATGATTCATAAAGTGCTTCAA 87891 Query 53955 ACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACT 54014 ||| || ||||| | ||||| || || |||| ||||| | | ||||| | Sbjct 87892 ACTTTTCGCCCCAGCAGTCTTCCAACCCTGGCGCTTCACTTGGACAGAAGAGAGACCAGT 87951 Query 54015 CTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGA 54073 | || | || ||| || |||||||| | ||| ||||| ||||| ||| || | Sbjct 87952 CACCATTGCTCTCCACACGCTTCATAAACAAGTCACAGATCCAGAGAGC-ATAGAACAAG 88010 Query 54074 TCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATA 54133 |||| | | | |||||| || || |||||||| || ||||| ||||| | | ||| Sbjct 88011 TCTCGAGCGCGGTTTTCCTCTTTACCAGTATTCTTCTTGAGATCAAGGAATTCAAAGATA 88070 Query 54134 TCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGA 54193 || | ||||| || |||||||| || | | | || || || ||||| ||||| ||| Sbjct 88071 TCTGCGTGCCATGGCTCCAAGTAGATAGCAAAGGCCCCGGGACGCTTGTTGCCTCCTTGA 88130 Query 54194 TCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCA 54253 || | || | ||| |||||||| | || | | ||| ||||| || ||||| || Sbjct 88131 TCCACATAGCGAGCAGTGTTATTGAAGACACGAAGCATCGGAATGATTCCATTCGAATGT 88190 Query 54254 CCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTA 54295 || ||||| || | || || || ||||||||| ||| Sbjct 88191 CCGTTGGTTCCAGCAATGTACGAACCGGAGGCACGAATCTTA 88232 >seq13 Length=692062 Score = 206 bits (228), Expect = 3e-48 Identities = 874/1362 (64%), Gaps = 29/1362 (2%) Strand=Plus/Plus Query 52953 CGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAA 53012 ||||||| || || | ||| |||||||| | ||||| |||||| | ||||||||| | Sbjct 276677 CGATGAATGCACCACGGTCAGCAGCCATGTCGATGATAACCTTTTGAGAAATTTCCCAGA 276736 Query 53013 TAGTTTTATAAACTCGCTTAATATCTTCTGGAA--GGTTTGTATTC--TGAATAGATCCA 53068 ||| || || | | ||| | ||| |||||| | || || | || | |||||| Sbjct 276737 CAGTCTTGTAGATACCCTTGAGATCAGCTGGAATAGCGCTG-ATGCGTTGGACTGATCCA 276795 Query 53069 CCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACT 53128 || | ||||| | ||||| || || |||||||| ||||| || | Sbjct 276796 TTCTCAGCAATAATACGGTTCTTCATGGTGTCGTTCCATAAACCAAGTTCGGTCAAGTCC 276855 Query 53129 CTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATA 53188 | | | |||||||| || | ||| ||||| || | | || | |||||||| ||| Sbjct 276856 TTCAACAAGTGCGGATTCACAATTTGGAATTCACCCGCAAGAACACGGCGAGTGTAGATA 276915 Query 53189 TTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTC 53248 || || || |||||||| | | |||| || || || | ||| |||| || |||||||| Sbjct 276916 TTGCTTGTGTACGGTTCAAAACACTCGTTGTTACCAAGAATCTGAGATGTCGATGCAGTT 276975 Query 53249 GGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGA 53308 ||||| || |||| ||| ||| |||| | |||||| | | ||| | ||| Sbjct 276976 GGCATTGGAGCCATCAACAAAGAGTTTCGGACACCGTACTTGGCCACCTTAGCGCGAAGA 277035 Query 53309 GGTTCCCAATTCCAAAGATCCGACG-GTACAA--CNNNNNNNNNNNNNNNTTGTAGAATA 53365 | ||||| | ||||| || || | ||| | | || | | | Sbjct 277036 GCATCCCAGT-CCAAA--TCAGAGTTGCTCAAATCAATGTTCCAAAGGTCTGGTTGCA-A 277091 Query 53366 CCGT--TACTGGCGTACGA--TCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAG 53421 | || | || | | | |||| | || || |||||| || || || || || | Sbjct 277092 CTGTCCTTTTGACATTGGGCTTCCTTCGTAAGTTGAGTATGGACCGTCTTTTTCGGCAAT 277151 Query 53422 TTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATC 53481 ||||| ||||| | ||| |||| || ||| |||| ||||||||||| || || || Sbjct 277152 CTCACACGAAGCCTCCACGGCAGCGTAGTACATGTTTTCAAAGATCTTCTTGTTCAGCTC 277211 Query 53482 TTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTG 53541 || ||| | | || |||||| | | || || || || || | |||||| Sbjct 277212 TTTCGCTCCTTCGGAGTCGAATGGAAGACGCATCTTGATGAAAGCATCGGCAAGTCCTTG 277271 Query 53542 AACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATA 53601 ||| |||| ||||||||||| || | | | || ||| | | || || | ||| || Sbjct 277272 AACTCCAAGACCGATAGGTCGGTGACGCATGTTTGAGTTCTTGGCCTCAATGACAGGGTA 277331 Query 53602 ATAATTAATATCTATAATTTTATTGAGGTTTCTGACAATTACTTTGACCACATCCTTCAG 53661 ||||||| || || || || || | ||| || || ||||| || | || Sbjct 277332 GAAATTAATGTCAATGATCTTGTTCAAGTTCTTGGTCATGACTTTAGTGACCTGGCGGAG 277391 Query 53662 TTTGAGAAAATC--AAATTGTCCATCTATTACAAACATG--TTCAATGCA-ATAGATGCC 53716 ||| ||| || || | ||| | | | |||| | | | || | | ||||| || Sbjct 277392 TTTCTCAAAGTCGTAAGTAGTCT-TGT-TCACAACAAAGGCTGGAAGGGAGATAGAAGCA 277449 Query 53717 AGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTA 53776 || ||||| ||||| | || | || | | || | | || || |||||||| ||| Sbjct 277450 AGGTTACAGACGGCGATTTCGTCAGGAGAAGTGTACTCGACGATTTCTGTGCAAAGGTTA 277509 Query 53777 CTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAA 53836 || ||||||||||| || || || ||||| ||| ||| ||||||| ||||| || || Sbjct 277510 CTGCACTTGATGGTGCCCAAGTTCTGTTGGTTAGACTTGCTGTTACAGGCATCTTTGTAC 277569 Query 53837 AGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACGACACGA 53896 | ||| |||| |||||||| || | || || || ||||| || | ||| | || Sbjct 277570 AACATGTATGGGGTACCAGTCTCGGTTTGAGACTCAATAATGGCGTACCAAAGCTTCTGA 277629 Query 53897 GCCTTTATTA-TAGATTTG-TATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCAA 53954 ||||| || | | | | | | |||| | ||| ||| | ||| | | ||||| Sbjct 277630 GCCTTGATAACTTTACGGGCCAACCCTTT--GCGTTCATATGATTCATAAAGTGCTTCAA 277687 Query 53955 ACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACT 54014 ||| || ||||| | ||||| || || |||| ||||| | | ||||| | Sbjct 277688 ACTTTTCGCCCCAGCAGTCTTCCAACCCTGGCGCTTCACTTGGACAGAAGAGAGACCAGT 277747 Query 54015 CTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGA 54073 | || | || ||| || |||||||| | ||| ||||| ||||| ||| || | Sbjct 277748 CACCATTGCTCTCCACACGCTTCATAAACAAGTCACAGATCCAGAGAGC-ATAGAACAAG 277806 Query 54074 TCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATA 54133 |||| | | | |||||| || || |||||||| || ||||| ||||| | | ||| Sbjct 277807 TCTCGAGCGCGGTTTTCCTCTTTACCAGTATTCTTCTTGAGATCAAGGAATTCAAAGATA 277866 Query 54134 TCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGA 54193 || | ||||| || |||||||| || | | | || || || ||||| ||||| ||| Sbjct 277867 TCTGCGTGCCATGGCTCCAAGTAGATAGCAAAGGCCCCGGGACGCTTGTTGCCTCCTTGA 277926 Query 54194 TCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCA 54253 || | || | ||| |||||||| | || | | ||| ||||| || ||||| || Sbjct 277927 TCCACATAGCGAGCAGTGTTATTGAAGACACGAAGCATCGGAATGATTCCATTCGAATGT 277986 Query 54254 CCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTA 54295 || ||||| || | || || || ||||||||| ||| Sbjct 277987 CCGTTGGTTCCAGCAATGTACGAACCGGAGGCACGAATCTTA 278028 >seq157 Length=558770 Score = 140 bits (154), Expect = 4e-28 Identities = 347/524 (66%), Gaps = 26/524 (5%) Strand=Plus/Plus Query 23843 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATT 23902 ||| |||||||| ||||| || || || || || || || |||| || || || Sbjct 322277 TTTCTGGTATTCTCCCACTTTCTTCTCAAAGAAGTTGGTCTTTCCTTGCAAGGAGATGAG 322336 Query 23903 TTCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAATCCCAATTCAGAAAT 23962 |||||||| || | || || || || |||| | | | ||||| ||||| Sbjct 322337 ATCCATGAAGTCAAAGGGGTTCTCGACGTTGTAGAGCTTAGGACAGCCCAA---AGAAAC 322393 Query 23963 CAA---TCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTAT 24019 ||| ||| |||||||| || || || || |||||| ||| | |||||||| || Sbjct 322394 CAAAAGTCTGTCTGCGACGAATTCAATGTACTGGCTCATCAAGTCAGAGTTCATTCCAAT 322453 Query 24020 AAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTAT 24079 ||||| || || || || || | | ||||||||| |||| ||| || || | | Sbjct 322454 CAGTTTCACAGGGAGGGCGTCAATCAAAAATTCTTGCTCAAGCTCGACAGCTTCAGAGAC 322513 Query 24080 AAT-----AGATCTT---ACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATC 24131 ||| ||| | |||||| | | || | ||| || |||||| Sbjct 322514 AATCTTGTAGACGTATCGACTGTTGGCTTATTC------TTCAACAAGC---TAAACAAA 322564 Query 24132 AAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTG 24191 | ||| || || || ||| || ||||||||||| ||| | || || || || || Sbjct 322565 AGACAAGCAAAGTCAGTGTGGAGGCCCTCGTCTCTGGAAATGAGCTCATTAGAGAATGTA 322624 Query 24192 AGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAG 24251 || || ||||| | ||||||||| || ||||| || ||||| ||||| || ||||| ||| Sbjct 322625 AGGCCTGGCATCAAGCCACGCTTCTTGAGCCAGAAGATGGAAGCAAAGGAACCAGAGAAG 322684 Query 24252 AAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCG---GCGCTGTCA 24308 |||||||| || || | || || |||| ||| | |||| | | | | ||||| Sbjct 322685 AAAATTCCCTCCACGACGGCGAAAGCAACAAGCCGTTCTGCGAAGGAGGAAGACTTGTCA 322744 Query 24309 TGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGG 24352 |||||||| |||||||||||||||||||| | | ||| || Sbjct 322745 GAGATCCACTTGAGAGCCCAATCGGCCTTCTTTCTAATACATGG 322788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593718356795760