Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoclosmatium_20globosum_20[genbank_20GCA_5F002104985.1_202017-04- 20] 437 sequences; 57,018,351 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq335 96.9 3e-15 seq30 86.0 5e-12 seq2 82.4 6e-11 >seq335 Length=386496 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 20945 GTTTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTC 21004 |||||| || || || | | || | || | |||||||||||| || ||||| || || Sbjct 38524 GTTTCCACCACGAAGACGCAAGACGAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAATC 38583 Query 21005 CGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCAC 21064 | ||||| || | ||||| || || || || || | || | | ||||||||| Sbjct 38584 AGAAAGGGTACGGCCATCCTCAAGTTGCTTTCCAGCGAAGATCAAACGCTGCTGGTCAGG 38643 Query 21065 GGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTC 21124 || | ||||||||||| |||||| ||||| | | | |||||| | ||| Sbjct 38644 TGGGATTCCTTCCTTGTCTTGGATCTTGGCCTTCACGTTCTCAATGGTATCAGACGACTC 38703 Query 21125 CGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| || |||||||||||||| || || |||||||| |||||||| Sbjct 38704 AACTTCCAAAGTGATGGTCTTGCCGGTCAAAGTCTTGACAAAGATTTGCAT 38754 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| || | ||| ||||||||||||||||| ||||| | ||||| || | || Sbjct 158337 AGGACCAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGAGAGGGTGCGGCCATCT 158278 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||| ||| || || || |||| | | ||||||||| || | |||||||| || Sbjct 158277 TCCAACTGCTTTCCAGCGAAAATCAAACGCTGCTGGTCTGGTGGGATTCCTTCCTTATCC 158218 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| || || | | | ||| || | ||| ||||| ||||||||| Sbjct 158217 TGGATCTTGGCCTTGACGTTTTCAATAGTGTCGGATGACTCGACTTCCAAAGTAATGGTC 158158 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || || || | || |||||||| |||||||| Sbjct 158157 TTTCCAGTGAGGGTCTTGACAAAGATTTGCAT 158126 >seq30 Length=118212 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| || | ||| ||||||||||||||||| ||||| | ||||| || | || Sbjct 47829 AGGACCAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGAGAGGGTGCGGCCATCT 47770 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||| ||| || || || |||| | | ||||||||| || | |||||||| || Sbjct 47769 TCCAACTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCTGGTGGGATTCCTTCCTTATCC 47710 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| || || | | | ||| || | ||| ||||| ||||||||| Sbjct 47709 TGGATCTTGGCCTTGACGTTTTCAATAGTGTCGGATGACTCGACTTCCAAAGTAATGGTC 47650 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || || || | || ||||| || |||||||| Sbjct 47649 TTTCCAGTGAGGGTCTTGACGAAGATTTGCAT 47618 >seq2 Length=712398 Score = 82.4 bits (90), Expect = 6e-11 Identities = 138/200 (69%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 ||||||||||| |||||||| ||||| | ||||| || ||||||| ||||| || || Sbjct 184700 GTGGACTCCTTCTGAATGTTGTAGTCAGAAAGGGTACGGCCGTCCTCGAGCTGCTTTCCG 184759 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 || | || || | ||||||||| || | || |||||||| |||||| || Sbjct 184760 GCGAAGATGAGACGCTGCTGGTCAGGTGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTG 184819 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | ||| || || | ||| || | ||| |||||||| || || | || Sbjct 184820 ACGTTCTCGATGGTGTCGGAAGACTCAACCTCGAGGGTGATGGTCTTTCCCGTAAGGGTC 184879 Query 21159 TTGACAAATATTTGCATTTT 21178 ||||| || |||||||| || Sbjct 184880 TTGACGAAAATTTGCATGTT 184899 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422256951073892