Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoclosmatium_20globosum_20[genbank_20GCA_5F002104985.1_202017-04- 20] 437 sequences; 57,018,351 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq90 147 2e-30 seq2 145 8e-30 seq30 132 5e-26 seq335 129 6e-25 seq157 107 2e-18 >seq90 Length=625778 Score = 147 bits (162), Expect = 2e-30 Identities = 165/218 (76%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 40688 AAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCA 40747 ||||||| || ||||| || || |||||||| || ||||||||| |||| || || | Sbjct 499204 AAATGCAGATCTTCGTCAAGACCCTCACGGGTAAGACCATCACCCTCGAGGTGGAGTCTT 499263 Query 40748 CCGACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 |||||| | | ||||| |||||| || || | ||||| ||||| ||||| | ||| Sbjct 499264 CCGACACTATCGAAAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCACCTGAC 499322 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| || ||||||| || || || ||||| || |||| |||||||| |||||| Sbjct 499323 CAGCAGCGTCTCATCTTTGCCGGAAAGCAGCTCGAGGACGGCCGCACCCTTTCTGACTAC 499382 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||||||||||||| | || || || || || ||||| Sbjct 499383 AACATCCAGAAGGAGTCGACCCTCCACCTCGTCTTGCG 499420 >seq2 Length=712398 Score = 145 bits (160), Expect = 8e-30 Identities = 165/219 (75%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || |||||||| ||||| || || || ||||| || ||||||||| |||| || || | Sbjct 184899 AACATGCAAATTTTCGTCAAGACCCTTACGGGAAAGACCATCACCCTCGAGGTTGAGTCT 184840 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 |||||| | | | |||| |||||| || || | ||||| ||||| ||||| | || Sbjct 184839 TCCGACACCATCGAGAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCACCTGA 184781 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| || ||||||| ||| || || ||||| || |||| || ||||| ||||| Sbjct 184780 CCAGCAGCGTCTCATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGTACCCTTTCTGACTA 184721 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||| ||||||||| |||| || || || || ||||| Sbjct 184720 CAACATTCAGAAGGAGTCCACCCTCCACCTTGTCTTGCG 184682 >seq30 Length=118212 Score = 132 bits (146), Expect = 5e-26 Identities = 157/210 (75%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || |||||||| || |||||||| | || || || | | Sbjct 48153 ATGCAGATCTTCGTCAAGACCCTCACGGGAAAGACCATCACTCTTGAGGTTGAGTCTTCT 48212 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | ||||| |||||| || |||| ||||| ||||| || || | ||||| Sbjct 48213 GACACCATCGAAAACG-TCAAGGCCAAGATTCAAGACAAGGAGGGTATTCCGCCTGACCA 48271 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| ||||||| ||| || || ||||| || || | ||||| ||| ||||||||| Sbjct 48272 GCAACGTCTCATCTTCGCCGGAAAGCAGCTTGAAGATGGCCGCACTCTCTCCGACTACAA 48331 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||| | || || || || || Sbjct 48332 CATCCAGAAGGAATCTACCCTTCACCTTGT 48361 Score = 100 bits (110), Expect = 3e-16 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || ||||| || || ||||| || | || ||||| | || Sbjct 47618 ATGCAAATCTTCGTCAAGACCCTCACTGGAAAGACCATTACTTTGGAAGTCGAGTCATCC 47677 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | ||||| |||||| || || | || || || || ||||| | ||||| Sbjct 47678 GACACTATTGAAAACG-TCAAGGCCAAGATCCAGGATAAGGAAGGAATCCCACCAGACCA 47736 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | || | ||| || || ||| |||| || | ||||||||| |||||||| Sbjct 47737 GCAGCGTTTGATTTTCGCCGGAAAGCAGTTGGAAGATGGCCGCACCCTCTCTGACTACAA 47796 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 ||| || |||||| | || || || Sbjct 47797 CATTCAAAAGGAGTCTACTCTTCA 47820 Score = 86.0 bits (94), Expect = 6e-12 Identities = 150/216 (69%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || || | || || || || ||||| | || || ||| || | Sbjct 48381 ATGCAAATCTTTGTCAAGACTTTGACTGGAAAGACTATCACTTTGGAAGTTGAATCCTCT 48440 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | |||| | |||| || || | || || || || || || | ||||| Sbjct 48441 GATACCATTGAGAACGTT-AAGGCCAAGATCCAGGATAAGGAAGGAATTCCACCCGACCA 48499 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| | |||| || || || ||| |||| |||| || ||||| |||||||| Sbjct 48500 GCAACGTTTGATCTTTGCTGGAAAGCAGTTGGAAGACGGCCGTACCCTTTCTGACTACAA 48559 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||| ||||||||| | || || || || || ||||| Sbjct 48560 CATTCAGAAGGAGTCTACCCTCCACCTTGTCTTGCG 48595 >seq335 Length=386496 Score = 129 bits (142), Expect = 6e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || |||||||| || |||||||| | || || || | | Sbjct 158661 ATGCAGATCTTCGTCAAGACCCTCACGGGAAAGACCATCACTCTTGAGGTTGAGTCTTCT 158720 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | ||| |||||| || |||| ||||| ||||| || || | |||||| Sbjct 158721 GACACCATCGAAAATGTCAAGGCCAAGATTCAAGACAAGGAGGGTATTCCACCTGACCAG 158780 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| ||||||| ||| || || ||||| || || | ||||| ||| |||||||||| Sbjct 158781 CAACGTCTCATCTTCGCCGGAAAGCAGCTTGAAGATGGCCGCACTCTCTCCGACTACAAC 158840 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||| | || || || || || Sbjct 158841 ATCCAGAAGGAATCTACCCTTCACCTTGT 158869 Score = 104 bits (114), Expect = 2e-17 Identities = 123/167 (74%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 40691 TGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCG 40750 ||||||| ||||||||||| ||||| ||||| ||||||||| |||| ||||| || | | Sbjct 157659 TGCAAATCTTCGTAAAAACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCTCTG 157718 Query 40751 ACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGC 40810 ||| | | | |||||| ||||| | ||||| || || ||||| | ||||| | Sbjct 157719 ACACTATCGAGAATGTCAAGGCGAAAATCCAGGACAAGGAAGGAATCCCACCAGACCAAC 157778 Query 40811 AACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTC 40857 | || ||||||| || || || ||||| || |||| || || ||| Sbjct 157779 AGCGTCTCATCTTTGCTGGAAAGCAGCTCGAAGACGGCCGTACTCTC 157825 Score = 98.7 bits (108), Expect = 1e-15 Identities = 122/167 (73%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 40691 TGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCG 40750 ||||||| ||||||||||| ||||| || || || |||||| |||| ||||| || | | Sbjct 39561 TGCAAATCTTCGTAAAAACCCTCACCGGAAAGACAATCACCCTCGAGGTCGAGTCCTCTG 39502 Query 40751 ACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGC 40810 ||| | | | | |||||| || || | ||||| ||||| || || | ||||||| Sbjct 39501 ACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGTATTCCACCTGACCAGC 39442 Query 40811 AACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTC 40857 | || ||||||| || || || ||||| || |||| || || ||| Sbjct 39441 AGCGTCTCATCTTTGCTGGAAAGCAGCTCGAAGACGGTCGTACTCTC 39395 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || || ||||| || || ||||| || | || ||||| | || Sbjct 158126 ATGCAAATCTTTGTCAAGACCCTCACTGGAAAGACCATTACTTTGGAAGTCGAGTCATCC 158185 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | ||||| |||||| || || | || || || || ||||| | ||||| Sbjct 158186 GACACTATTGAAAACG-TCAAGGCCAAGATCCAGGATAAGGAAGGAATCCCACCAGACCA 158244 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | || | ||| || || ||| |||| || | ||||||||| |||||||| Sbjct 158245 GCAGCGTTTGATTTTCGCTGGAAAGCAGTTGGAAGATGGCCGCACCCTCTCTGACTACAA 158304 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 ||| || |||||| | || || || Sbjct 158305 CATTCAAAAGGAGTCTACTCTTCA 158328 Score = 95.1 bits (104), Expect = 1e-14 Identities = 152/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || | || || || |||||||| | || || ||| || | Sbjct 158889 ATGCAAATCTTCGTCAAGACTTTGACTGGAAAGACCATCACTTTGGAAGTTGAATCCTCT 158948 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | |||| | |||| || || | || || || || || || | ||||| Sbjct 158949 GATACCATTGAGAACGTT-AAGGCCAAGATCCAGGATAAGGAAGGAATTCCACCCGACCA 159007 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| | |||| || || || ||| |||| |||| || ||||| |||||||| Sbjct 159008 GCAACGTTTGATCTTTGCTGGAAAGCAGTTGGAAGACGGCCGTACCCTTTCTGACTACAA 159067 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||| ||||||||| | || || || || || ||||| Sbjct 159068 CATTCAGAAGGAGTCTACCCTCCACCTTGTCTTGCG 159103 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || || || ||||| ||| | || ||||| | || Sbjct 38982 ATGCAGATCTTCGTCAAGACACTTACTGGAAAGACCATTACCTTGGAAGTCGAGTCATCC 38923 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | ||| | |||| || |||| || || ||||| || || | |||||| Sbjct 38922 GACACTATTGAAAATGTGAAGGCCAAGATTCAGGATAAGGAGGGTATTCCACCTGACCAG 38863 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| || || | ||| || || ||||| || || | ||||| | |||||| ||| Sbjct 38862 CAACGTCTTATTTTCGCTGGAAAGCAGCTTGAAGATGGTCGCACTTTGTCCGACTATAAC 38803 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 || |||||||| |||| || || || || Sbjct 38802 ATTCAGAAGGAATCCACTCTTCACCTTGT 38774 Score = 89.7 bits (98), Expect = 5e-13 Identities = 151/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || || | || ||||| |||||||| | || || || | | Sbjct 38754 ATGCAAATCTTTGTCAAGACTTTGACCGGCAAGACCATCACTTTGGAAGTTGAGTCGTCT 38695 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | |||| | |||| || || | ||||| || || ||||| | ||||| Sbjct 38694 GATACCATTGAGAACG-TGAAGGCCAAGATCCAAGACAAGGAAGGAATCCCACCTGACCA 38636 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | |||| ||| || || || || || || | || ||||| || ||||| Sbjct 38635 GCAGCGTTTGATCTTCGCTGGAAAGCAACTTGAGGATGGCCGTACCCTTTCTGATTACAA 38576 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||||||||||| |||| || || || || ||||| Sbjct 38575 CATCCAGAAGGAGTCCACTCTTCACCTCGTCTTGCG 38540 >seq157 Length=558770 Score = 107 bits (118), Expect = 2e-18 Identities = 154/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 116982 AGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCC 117041 |||||||||| ||||| || |||||| | | || || |||||| || || | Sbjct 322775 AGAAGGCCGATTGGGCTCTCAAGTGGATCTCTGACAAGTCTTCCTCCTTCGCAGAACGGC 322716 Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101 | || || ||||| | ||| ||||| | ||||| || || || || |||| || | Sbjct 322715 TTGTTGCTTTCGCCGTCGTGGAGGGAATTTTCTTCTCTGGTTCCTTTGCTTCCATCTTCT 322656 Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161 |||||||||| || ||| | ||||| ||||| || ||| || |||||||| ||||| | Sbjct 322655 GGCTCAAGAAGCGTGGCTTGATGCCAGGCCTTACATTCTCTAATGAGCTCATTTCCAGAG 322596 Query 117162 ACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTT 117198 ||||||| || || |||||||| ||| | |||| Sbjct 322595 ACGAGGGCCTCCACACTGACTTTGCTTGTCTTTTGTT 322559 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515216385615120