Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoclosmatium_20globosum_20[genbank_20GCA_5F002104985.1_202017-04- 20] 437 sequences; 57,018,351 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq2 118 9e-22 seq335 111 1e-19 seq90 109 5e-19 seq30 107 2e-18 >seq2 Length=712398 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 ||||||| || | | ||| || | ||||| || ||||| || ||||||||||| || Sbjct 184668 TACCTCCACGGAGACGCAAGACAAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCAG 184727 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | || || ||||||||||| ||||| ||| |||||||||||||||| || || | Sbjct 184728 AAAGGGTACGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCAGGTG 184787 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || ||||||||||| || || || || | |||| |||||| | ||| | Sbjct 184788 GGATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGGAAGACTCAA 184847 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 |||||| ||| | || || || || || || || || ||||| |||||| Sbjct 184848 CCTCGAGGGTGATGGTCTTTCCCGTAAGGGTCTTGACGAAAATTTGCATG 184897 >seq335 Length=386496 Score = 111 bits (122), Expect = 1e-19 Identities = 117/154 (76%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 118584 TCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTG 118643 || |||||||| |||||||| |||||||||||||||| || || || || ||||||||| Sbjct 39408 TCTTCGAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCAGGTGGAATACCCTCCTTG 39467 Query 118644 TCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACC 118703 ||| || || || || | |||| |||||| | | ||||||||||| ||| | Sbjct 39468 TCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGACTCGACCTCGAGGGTGATT 39527 Query 118704 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCA 118737 || || ||||| || |||||||| || || |||| Sbjct 39528 GTCTTTCCGGTGAGGGTTTTTACGAAGATTTGCA 39561 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 ||||| || || || |||||||| ||| | |||||| ||| || ||||| ||||| Sbjct 158857 GTAGATTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATCTTCAAGCTGCTTTCCG 158798 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| |||||||||| ||||| || || || || |||||||||||| ||| || || Sbjct 158797 GCGAAGATGAGACGTTGCTGGTCAGGTGGAATACCCTCCTTGTCTTGAATCTTGGCCTTG 158738 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | ||||| |||||| | ||| ||||| | || | || || || || || || Sbjct 158737 ACATTTTCGATGGTGTCAGAAGACTCAACCTCAAGAGTGATGGTCTTTCCCGTGAGGGTC 158678 Query 118722 TTTACAAAAATCTGCAT 118738 || || || |||||||| Sbjct 158677 TTGACGAAGATCTGCAT 158661 Score = 102 bits (112), Expect = 7e-17 Identities = 115/154 (75%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 118584 TCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTG 118643 || |||||||| |||||||| ||||||||||||| || || || || || || |||||| Sbjct 157812 TCTTCGAGCTGCTTTCCAGCAAAGATGAGACGCTGTTGGTCTGGTGGGATTCCTTCCTTG 157753 Query 118644 TCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACC 118703 || ||||| || || | |||| ||||| | | ||||||||||| ||| | Sbjct 157752 TCCTGGATTTTCGCCTTGACATTCTCGATAGTGTCAGAGGACTCGACCTCGAGGGTGATG 157693 Query 118704 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCA 118737 || |||||||| || |||||||| || || |||| Sbjct 157692 GTCTTGCCGGTGAGGGTTTTTACGAAGATTTGCA 157659 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 ||| || | ||| | || ||||| || || ||||||||||| | || || ||| Sbjct 38542 CAAGACGAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCAGAAAGGGTACGGCCATC 38601 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||| || || ||||||||| |||| | ||||||||| || || || || || |||||||| Sbjct 38602 CTCAAGTTGCTTTCCAGCGAAGATCAAACGCTGCTGGTCAGGTGGGATTCCTTCCTTGTC 38661 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 | || || || || | || | ||| || | ||| || || | || | || Sbjct 38662 TTGGATCTTGGCCTTCACGTTCTCAATGGTATCAGACGACTCAACTTCCAAAGTGATGGT 38721 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||||||| ||| || ||||| || ||||| Sbjct 38722 CTTGCCGGTCAAAGTCTTGACAAAGATTTGCAT 38754 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || | | ||| || | ||||| ||||| ||||||||||||||||| || Sbjct 38982 TACCACCACGGAGACGCAAAACAAGGTGGAGAGTAGATTCTTTTTGAATGTTGTAGTCAG 39041 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | || || ||| || | ||| ||||| || |||| | ||||||||| || || | Sbjct 39042 AGAGGGTTCGGCCATCTTCCAACTGCTTTCCGGCAAAGATCAAACGCTGCTGGTCAGGTG 39101 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || || |||||||| || || || || | || | ||| || | | || | Sbjct 39102 GGATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTATCGGAGGATTCAA 39161 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| | || | || || || |||| ||| || ||||| |||||||| Sbjct 39162 CCTCAAGAGTAATGGTCTTTCCAGTCAAAGTCTTGACAAAGATCTGCAT 39210 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | |||||||| |||||||||||||| || | ||||| ||| || Sbjct 158334 ACCAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCC 158275 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 | ||| ||||||||| | || | ||||||||| || || || || || ||||| || Sbjct 158274 AACTGCTTTCCAGCGAAAATCAAACGCTGCTGGTCTGGTGGGATTCCTTCCTTATCCTGG 158215 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | ||| | ||||| | |||||| || | || | || || Sbjct 158214 ATCTTGGCCTTGACGTTTTCAATAGTGTCGGATGACTCGACTTCCAAAGTAATGGTCTTT 158155 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || || || ||||| || ||||| Sbjct 158154 CCAGTGAGGGTCTTGACAAAGATTTGCAT 158126 >seq90 Length=625778 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 |||||| || | | ||| || | ||||| || ||||| || || |||||||| || Sbjct 499433 ACCTCCACGGAGACGCAAGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCAGA 499374 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 | ||||| ||||||||||| ||||| || |||||||||||||||| || || || Sbjct 499373 AAGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCAAAGATGAGACGCTGCTGGTCAGGTGG 499314 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690 || ||||||||||| || || || || | ||||| ||||| | ||| || Sbjct 499313 GATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTTTCGATAGTGTCGGAAGACTCCAC 499254 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| ||| | || || || || || || || || || |||||||| Sbjct 499253 CTCGAGGGTGATGGTCTTACCCGTGAGGGTCTTGACGAAGATCTGCAT 499206 >seq30 Length=118212 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 ||||| || || || |||||||| ||| | |||||| ||| || ||||| ||||| Sbjct 48349 GTAGATTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATCTTCAAGCTGCTTTCCG 48290 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| |||||||||| ||||| || || || || |||||||||||| ||| || || Sbjct 48289 GCGAAGATGAGACGTTGCTGGTCAGGCGGAATACCCTCCTTGTCTTGAATCTTGGCCTTG 48230 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | ||||| |||||| | ||| ||||| | || | || || || || || || Sbjct 48229 ACGTTTTCGATGGTGTCAGAAGACTCAACCTCAAGAGTGATGGTCTTTCCCGTGAGGGTC 48170 Query 118722 TTTACAAAAATCTGCAT 118738 || || || |||||||| Sbjct 48169 TTGACGAAGATCTGCAT 48153 Score = 102 bits (112), Expect = 7e-17 Identities = 115/154 (75%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 118584 TCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTG 118643 || |||||||| |||||||| |||||||||||||||| || || || || || |||||| Sbjct 47303 TCTTCGAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCTGGTGGGATTCCTTCCTTG 47244 Query 118644 TCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACC 118703 || ||||| || || | |||| ||||| | | ||||||||||| ||| | Sbjct 47243 TCCTGGATTTTCGCCTTGACATTCTCGATAGTGTCAGAGGACTCGACCTCGAGGGTGATG 47184 Query 118704 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCA 118737 || |||||||| || || || ||||| || |||| Sbjct 47183 GTCTTGCCGGTGAGGGTCTTAACAAAGATTTGCA 47150 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 118583 ATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTT 118642 |||||| || || |||||||| |||||||||||||||| || || || || |||||||| Sbjct 48001 ATCCTCAAGTTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCTGGTGGAATACCCTCCTT 47942 Query 118643 GTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCAC 118702 ||| || || || || | || | ||| || | | || ||||||| ||| | Sbjct 47941 GTCCTGGATCTTGGCCTTCACGTTCTCAATGGTATCAGAGGATTCAACCTCGAGGGTGAT 47882 Query 118703 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || |||| ||| || || ||||||||||| Sbjct 47881 AGTCTTTCCAGTCAAAGTCTTGACGAAAATCTGCAT 47846 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433828089446404