Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoclosmatium_20globosum_20[genbank_20GCA_5F002104985.1_202017-04- 20] 437 sequences; 57,018,351 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq2 122 1e-22 seq90 111 2e-19 seq30 102 9e-17 seq335 89.7 6e-13 >seq2 Length=712398 Score = 122 bits (134), Expect = 1e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||| | | |||||| || | || | ||| |||||| ||||| ||||| |||| Sbjct 184670 CCTCCACGGAGACGCAAGACAAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCAGAA 184729 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || || |||| || |||||||| || ||||| ||||| ||||||||||| | || Sbjct 184730 AGGGTACGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCAGGTGGG 184789 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | | |||||||||| ||| || |||| || | | |||||| || || || Sbjct 184790 ATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGGAAGACTCAACC 184849 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186 |||| |||||||| || ||||| || ||||| || || |||||||| || Sbjct 184850 TCGAGGGTGATGGTCTTTCCCGTAAGGGTCTTGACGAAAATTTGCATGTT 184899 >seq90 Length=625778 Score = 111 bits (122), Expect = 2e-19 Identities = 141/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| |||| || || || |||| || |||||||| || || || Sbjct 499397 CTCCTTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCAAA 499338 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| ||||||||||| | || | | |||||||||| ||| || |||| | Sbjct 499337 GATGAGACGCTGCTGGTCAGGTGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTT 499278 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | |||||| || ||||| |||| |||||||| || ||||| || ||||| || Sbjct 499277 TTCGATAGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTACCCGTGAGGGTCTTGAC 499218 Query 43172 AAAGATTTGCATTT 43185 ||||| ||||||| Sbjct 499217 GAAGATCTGCATTT 499204 >seq30 Length=118212 Score = 102 bits (112), Expect = 9e-17 Identities = 122/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| || |||| || |||||||| ||||| || ||||| ||||||||||| | || Sbjct 47315 AGAGTACGGCCGTCTTCGAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCTGGTGGG 47256 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | | ||||||||| |||||| |||| || | | ||||| || || || Sbjct 47255 ATTCCTTCCTTGTCCTGGATTTTCGCCTTGACATTCTCGATAGTGTCAGAGGACTCGACC 47196 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCA 43182 |||| |||||||| ||||| || || ||||| ||||||||||||| Sbjct 47195 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTAACAAAGATTTGCA 47150 >seq335 Length=386496 Score = 89.7 bits (98), Expect = 6e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||||||||| ||||| |||| || || || | || || | |||||| |||||||| Sbjct 158317 CTCCTTTTGAATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAACTGCTTTCCAGCGAA 158258 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || | ||||||||||| | || | | ||||| ||| ||| || |||| | Sbjct 158257 AATCAAACGCTGCTGGTCTGGTGGGATTCCTTCCTTATCCTGGATCTTGGCCTTGACGTT 158198 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | |||||| || || || || | || ||||| || || || || ||||| || Sbjct 158197 TTCAATAGTGTCGGATGACTCGACTTCCAAAGTAATGGTCTTTCCAGTGAGGGTCTTGAC 158138 Query 43172 AAAGATTTGCAT 43183 |||||||||||| Sbjct 158137 AAAGATTTGCAT 158126 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 |||||| || | || | ||| |||||| || || |||||||||| || || || | Sbjct 38539 ACGCAAGACGAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCAGAAAGGGTACGGCC 38598 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || || ||||| |||||||| || | ||||||||||| | || | | ||||| Sbjct 38599 ATCCTCAAGTTGCTTTCCAGCGAAGATCAAACGCTGCTGGTCAGGTGGGATTCCTTCCTT 38658 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 ||| ||| || || | || | | || || ||| || || || | ||||| Sbjct 38659 GTCTTGGATCTTGGCCTTCACGTTCTCAATGGTATCAGACGACTCAACTTCCAAAGTGAT 38718 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||| ||||| || | ||||| |||||||||||||| Sbjct 38719 GGTCTTGCCGGTCAAAGTCTTGACAAAGATTTGCAT 38754 Score = 84.2 bits (92), Expect = 3e-11 Identities = 118/166 (71%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| || |||| || |||||||| ||||| || ||||| ||||||||||| | || Sbjct 39396 AGAGTACGACCGTCTTCGAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCAGGTGGA 39455 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | | ||||||||| ||| || |||| || | | ||||| || || || Sbjct 39456 ATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGACTCGACC 39515 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCA 43182 |||| ||||| || || || || || || ||||| |||||||||| Sbjct 39516 TCGAGGGTGATTGTCTTTCCGGTGAGGGTTTTTACGAAGATTTGCA 39561 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571814476446360