Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoclosmatium_20globosum_20[genbank_20GCA_5F002104985.1_202017-04- 20] 437 sequences; 57,018,351 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq335 98.7 6e-16 seq30 89.7 3e-13 seq90 87.8 1e-12 seq2 84.2 1e-11 >seq335 Length=386496 Score = 98.7 bits (108), Expect = 6e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || || | || || ||||| | |||| |||||| || ||||||||||| || Sbjct 38984 CCACCACGGAGACGCAAAACAAGGTGGAGAGTAGATTCTTTTTGAATGTTGTAGTCAGAG 39043 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || ||||||||||| || || || || | ||||||||||| || Sbjct 39044 AGGGTTCGGCCATCTTCCAACTGCTTTCCGGCAAAGATCAAACGCTGCTGGTCAGGTGGG 39103 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | |||||||| ||||| ||| | || | || | ||||| ||||| || Sbjct 39104 ATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTATCGGAGGATTCAACC 39163 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | || ||||| || || || | ||| || |||||||||||||| Sbjct 39164 TCAAGAGTAATGGTCTTTCCAGTCAAAGTCTTGACAAAGATCTGCAT 39210 Score = 95.1 bits (104), Expect = 8e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || || ||||| | ||| ||| ||||| |||||||||||||| || ||| | || Sbjct 158872 AGGACAAGGTGAAGGGTAGATTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATCT 158813 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | |||||| || ||||| ||||| || |||||||| || | | ||||||||| Sbjct 158812 TCAAGCTGCTTTCCGGCGAAGATGAGACGTTGCTGGTCAGGTGGAATACCCTCCTTGTCT 158753 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | || | || | || | || || || || | |||||||| Sbjct 158752 TGAATCTTGGCCTTGACATTTTCGATGGTGTCAGAAGACTCAACCTCAAGAGTGATGGTC 158693 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || ||||| || || || ||||||||||| Sbjct 158692 TTTCCCGTGAGGGTCTTGACGAAGATCTGCAT 158661 Score = 89.7 bits (98), Expect = 3e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||| ||| | |||| || || || ||||||||||| || || ||| | || Sbjct 158337 AGGACCAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGAGAGGGTGCGGCCATCT 158278 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 ||||||||||| || |||||||| | ||||||||||| || | | ||||| || Sbjct 158277 TCCAACTGCTTTCCAGCGAAAATCAAACGCTGCTGGTCTGGTGGGATTCCTTCCTTATCC 158218 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | | | || | |||| || ||||| |||| || ||||| Sbjct 158217 TGGATCTTGGCCTTGACGTTTTCAATAGTGTCGGATGACTCGACTTCCAAAGTAATGGTC 158158 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || ||||| || || |||||||| ||||| Sbjct 158157 TTTCCAGTGAGGGTCTTGACAAAGATTTGCAT 158126 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || || || | || || ||||| | ||| || ||||| |||||||| || || Sbjct 38527 TCCACCACGAAGACGCAAGACGAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCAGA 38586 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || |||| | || || | ||||| || ||||| || | ||||||||||| || Sbjct 38587 AAGGGTACGGCCATCCTCAAGTTGCTTTCCAGCGAAGATCAAACGCTGCTGGTCAGGTGG 38646 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | |||||||| ||||| ||| | | | || | ||| | ||| || || Sbjct 38647 GATTCCTTCCTTGTCTTGGATCTTGGCCTTCACGTTCTCAATGGTATCAGACGACTCAAC 38706 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||||| |||||||| | ||| || |||||||| ||||| Sbjct 38707 TTCCAAAGTGATGGTCTTGCCGGTCAAAGTCTTGACAAAGATTTGCAT 38754 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || || || | || || ||||| | ||| || ||||| ||||||||||| || Sbjct 159116 TCCTCCACGAAGACGCAAGACAAGGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCAGA 159057 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || |||| |||| ||||||||||| || || || || | || ||||||||| || Sbjct 159056 AAGGGTACGGCCGTCTTCCAACTGCTTTCCAGCAAAGATCAAACGTTGCTGGTCGGGTGG 158997 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | ||||| || ||||| ||| | | | || | ||| | ||||| || Sbjct 158996 AATTCCTTCCTTATCCTGGATCTTGGCCTTAACGTTCTCAATGGTATCAGAGGATTCAAC 158937 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||||| || || || | ||| || || ||||| ||||| Sbjct 158936 TTCCAAAGTGATGGTCTTTCCAGTCAAAGTCTTGACGAAGATTTGCAT 158889 Score = 86.0 bits (94), Expect = 4e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || || ||||| | ||| ||| ||||| ||||| |||||||||| || | || Sbjct 38771 AGAACAAGGTGAAGAGTGGATTCCTTCTGAATGTTATAGTCGGACAAAGTGCGACCATCT 38830 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | |||||| || |||||||| || || |||||||| || | | |||||| || Sbjct 38831 TCAAGCTGCTTTCCAGCGAAAATAAGACGTTGCTGGTCAGGTGGAATACCCTCCTTATCC 38890 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | || | || | |||| || ||||| |||| || ||||| Sbjct 38891 TGAATCTTGGCCTTCACATTTTCAATAGTGTCGGATGACTCGACTTCCAAGGTAATGGTC 38950 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || || || || || || ||||||||||| Sbjct 38951 TTTCCAGTAAGTGTCTTGACGAAGATCTGCAT 38982 >seq30 Length=118212 Score = 89.7 bits (98), Expect = 3e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || || ||||| | ||| ||| ||||| |||||||||||||| || ||| | || Sbjct 48364 AGGACAAGGTGAAGGGTAGATTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATCT 48305 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | |||||| || ||||| ||||| || |||||||| || | | ||||||||| Sbjct 48304 TCAAGCTGCTTTCCGGCGAAGATGAGACGTTGCTGGTCAGGCGGAATACCCTCCTTGTCT 48245 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | | | || | || | || || || || | |||||||| Sbjct 48244 TGAATCTTGGCCTTGACGTTTTCGATGGTGTCAGAAGACTCAACCTCAAGAGTGATGGTC 48185 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || ||||| || || || ||||||||||| Sbjct 48184 TTTCCCGTGAGGGTCTTGACGAAGATCTGCAT 48153 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || || || | || || ||||| | ||| || ||||| ||||||||||| || Sbjct 48608 TCCTCCACGAAGACGCAAGACAAGGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCAGA 48549 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || |||| |||| ||||||||||| || || || || | || ||||||||| || Sbjct 48548 AAGGGTACGGCCGTCTTCCAACTGCTTTCCAGCAAAGATCAAACGTTGCTGGTCGGGTGG 48489 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | ||||| || ||||| ||| | | | || | ||| | ||||| || Sbjct 48488 AATTCCTTCCTTATCCTGGATCTTGGCCTTAACGTTCTCAATGGTATCAGAGGATTCAAC 48429 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| ||||| || || || || | ||| || |||||||| ||||| Sbjct 48428 TTCCAAAGTGATAGTCTTTCCAGTCAAAGTCTTGACAAAGATTTGCAT 48381 Score = 86.0 bits (94), Expect = 4e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||| ||| | |||| || || || ||||||||||| || || ||| | || Sbjct 47829 AGGACCAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGAGAGGGTGCGGCCATCT 47770 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 ||||||||||| || |||||||| | ||||||||||| || | | ||||| || Sbjct 47769 TCCAACTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCTGGTGGGATTCCTTCCTTATCC 47710 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | | | || | |||| || ||||| |||| || ||||| Sbjct 47709 TGGATCTTGGCCTTGACGTTTTCAATAGTGTCGGATGACTCGACTTCCAAAGTAATGGTC 47650 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || ||||| || || || ||||| ||||| Sbjct 47649 TTTCCAGTGAGGGTCTTGACGAAGATTTGCAT 47618 >seq90 Length=625778 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||||||||||| || || ||| |||| || | |||||| || || || Sbjct 499396 TCCTTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCAAAG 499337 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 ||||| ||||||||||| || | | ||||||||| ||||| ||| | | Sbjct 499336 ATGAGACGCTGCTGGTCAGGTGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTT 499277 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | |||| || || || || | |||||||| || || ||||| || || || Sbjct 499276 TCGATAGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTACCCGTGAGGGTCTTGACG 499217 Query 34379 AAGATCTGCAT 34389 ||||||||||| Sbjct 499216 AAGATCTGCAT 499206 >seq2 Length=712398 Score = 84.2 bits (92), Expect = 1e-11 Identities = 140/201 (70%), Gaps = 1/201 (0%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||||||||||| || || |||| |||| || | |||||| || ||||| Sbjct 184706 TCCTTCTGAATGTTGTAGTCAGAAAGGGTACGGCCGTCCTCGAGCTGCTTTCCGGCGAAG 184765 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 ||||| ||||||||||| || | | ||||||||| ||||| ||| | | Sbjct 184766 ATGAGACGCTGCTGGTCAGGTGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTC 184825 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | |||| || || || || | |||||||| || || || || || || || Sbjct 184826 TCGATGGTGTCGGAAGACTCAACCTCGAGGGTGATGGTCTTTCCCGTAAGGGTCTTGACG 184885 Query 34379 AAGATCTGCATCGCTCGAATG 34399 || || ||||| | || |||| Sbjct 184886 AAAATTTGCAT-GTTCTAATG 184905 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323070279338720