Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoclosmatium_20globosum_20[genbank_20GCA_5F002104985.1_202017-04- 20] 437 sequences; 57,018,351 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq2 109 4e-19 seq335 87.8 1e-12 seq30 87.8 1e-12 >seq2 Length=712398 Score = 109 bits (120), Expect = 4e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 || || | ||| || ||| ||||||||||||||||||||| || || |||| Sbjct 184685 AAGACAAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCAGAAAGGGTACGGCCGTCC 184744 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 || || || ||||||||||| || | ||||| ||||| || || | |||||||||||| Sbjct 184745 TCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCAGGTGGGATTCCCTCCTTGTCC 184804 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 || || ||| || | | | | |||| | ||| ||||| | ||| || ||| Sbjct 184805 TGGATCTTGGCCTTGACGTTCTCGATGGTGTCGGAAGACTCAACCTCGAGGGTGATGGTC 184864 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339 || ||||| || ||||| || || ||||||||||| Sbjct 184865 TTTCCCGTAAGGGTCTTGACGAAAATTTGCATGTT 184899 >seq335 Length=386496 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 |||||||| |||||||||||| || ||| | || || || || ||||||||||| Sbjct 158851 TCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATCTTCAAGCTGCTTTCCGGCGAAG 158792 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 || | || || ||||| || || | |||||||||||| ||| || ||| || Sbjct 158791 ATGAGACGTTGCTGGTCAGGTGGAATACCCTCCTTGTCTTGAATCTTGGCCTTGACATTT 158732 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | | |||| | ||| ||||| | || || ||||| ||||| || ||||| || Sbjct 158731 TCGATGGTGTCAGAAGACTCAACCTCAAGAGTGATGGTCTTTCCCGTGAGGGTCTTGACG 158672 Query 45326 AAGATTTGCAT 45336 ||||| ||||| Sbjct 158671 AAGATCTGCAT 158661 >seq30 Length=118212 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 |||||||| |||||||||||| || ||| | || || || || ||||||||||| Sbjct 48343 TCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATCTTCAAGCTGCTTTCCGGCGAAG 48284 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 || | || || ||||| || || | |||||||||||| ||| || ||| || Sbjct 48283 ATGAGACGTTGCTGGTCAGGCGGAATACCCTCCTTGTCTTGAATCTTGGCCTTGACGTTT 48224 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | | |||| | ||| ||||| | || || ||||| ||||| || ||||| || Sbjct 48223 TCGATGGTGTCAGAAGACTCAACCTCAAGAGTGATGGTCTTTCCCGTGAGGGTCTTGACG 48164 Query 45326 AAGATTTGCAT 45336 ||||| ||||| Sbjct 48163 AAGATCTGCAT 48153 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||||||||||||||| || || |||| |||| || ||||| || || Sbjct 48572 CTCCTTCTGAATGTTGTAGTCAGAAAGGGTACGGCCGTCTTCCAACTGCTTTCCAGCAAA 48513 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 ||||| || || |||||||| || | || ||||| ||| || || |||||| Sbjct 48512 GATCAAACGTTGCTGGTCGGGTGGAATTCCTTCCTTATCCTGGATCTTGGCCTTAACGTT 48453 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | | | || || || |||| || || ||||| || |||| |||||| || Sbjct 48452 CTCAATGGTATCAGAGGATTCAACTTCCAAAGTGATAGTCTTTCCAGTCAAAGTCTTGAC 48393 Query 45325 AAAGATTTGCAT 45336 |||||||||||| Sbjct 48392 AAAGATTTGCAT 48381 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395073095854177