Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoclosmatium_20globosum_20[genbank_20GCA_5F002104985.1_202017-04- 20] 437 sequences; 57,018,351 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq157 111 1e-19 seq335 104 2e-17 seq30 104 2e-17 seq2 102 7e-17 seq90 87.8 2e-12 >seq157 Length=558770 Score = 111 bits (122), Expect = 1e-19 Identities = 166/233 (71%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 57571 TTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGT 57630 ||||| | |||||||| || ||||||||||| || ||||| || |||||||||||| ||| Sbjct 323250 TTTGGCAAATGTACAAGAAAGCAGAAGCATCCTTCTGGACTGTTGAAGAAGTAGACTTGT 323191 Query 57631 CTAAGGATCTGAGCGATTGGGATTCCCTCAAAGAATCTGA-GAGAAAT--TTTATTAAAC 57687 | || ||| ||||| ||||| |||| || ||| ||||||| ||| || | Sbjct 323190 CCAAAGATGCTAGCGACTGGGAGAAGCTCAGTGA---TGACGAGAAATTCTTTGTTTCCC 323134 Query 57688 ACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGAT 57747 |||| | || || ||||| || || || || || || || ||||| | || || |||| Sbjct 323133 ACGTCCTTGCCTTCTTCGCTGCTTCGGACGGCATCGTGAATGAGAACCTTGTTGAGAGAT 323074 Query 57748 TTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTG 57800 | || | || || || | | || |||||||| || || || || || ||| Sbjct 323073 TCTCCAATGATGTTCAGATTCCAGAAGCGAGATGTTTCTATGGCTTCCAGGTG 323021 >seq335 Length=386496 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| || || || || || || ||| | || || || | ||| Sbjct 38982 ATGCAGATCTTCGTCAAGACACTTACTGGAAAGACCATTACCTTGGAAGTCGAGTCATCC 38923 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | | |||| || || | || ||| ||||| || | || || |||||| Sbjct 38922 GACACTATTGAAAATGTGAAGGCCAAGATTCAGGATAAGGAGGGTATTCCACCTGACCAG 38863 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||||| || |||||||| || ||| | ||||| | ||| || ||| |||||| Sbjct 38862 CAACGTCTTATTTTCGCTGGAAAGCAGCTTGAAGATGGTCGCACTTTGTCCGACTATAAC 38803 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| || ||||| |||||||| || || || Sbjct 38802 ATTCAGAAGGAATCCACTCTTCACCTTGTTCT 38771 Score = 104 bits (114), Expect = 2e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 31194 TGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCG 31253 ||||||| |||||||| || || || ||||| || |||||| |||| || || | || | Sbjct 157659 TGCAAATCTTCGTAAAAACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCTCTG 157718 Query 31254 ACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGC 31313 ||| | |||| | ||||| || ||| |||||||||||| | || || ||||| | Sbjct 157719 ACACTATCGAGAATGTCAAGGCGAAAATCCAGGACAAGGAAGGAATCCCACCAGACCAAC 157778 Query 31314 AGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348 ||||||| || || ||||| || ||| | |||||| Sbjct 157779 AGCGTCTCATCTTTGCTGGAAAGCAGCTCGAAGAC 157813 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || ||||| || || || || || || || | || || || | ||| Sbjct 158126 ATGCAAATCTTTGTCAAGACCCTCACTGGAAAGACCATTACTTTGGAAGTCGAGTCATCC 158185 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | | |||| ||||| | || ||| |||||||| | || || |||||| Sbjct 158186 GACACTATTGAAAACGTCAAGGCCAAGATCCAGGATAAGGAAGGAATCCCACCAGACCAG 158245 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||| | || |||||||| || ||||||||||| || | || || ||| Sbjct 158246 CAGCGTTTGATTTTCGCTGGAAAGCAGTTGGAAGATGGCCGCACCCTCTCTGACTACAAC 158305 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 |||||||| || || |||||||| |||| ||| | || | || |||| Sbjct 158306 ATTCAAAAGGAGTCTACTCTTCACTTGGTCCTTCGTCTTCGTGGTGGTA 158354 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || |||||| |||| || || || || || | || |||||| | ||| Sbjct 39210 ATGCAGATCTTTGTCAAGACTTTGACTGGAAAGACCATTACTCTTGAGGTTGAATCCTCC 39151 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | || | ||||| | || |||||||||||| | || || |||||| Sbjct 39150 GATACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCACCTGACCAG 39091 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||| | || || || || || ||||||||||| || | || || ||| Sbjct 39090 CAGCGTTTGATCTTTGCCGGAAAGCAGTTGGAAGATGGCCGAACCCTCTCTGACTACAAC 39031 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGT 31401 |||||||||||||| ||||| || || || Sbjct 39030 ATTCAAAAAGAATCTACTCTCCACCTTGT 39002 Score = 87.8 bits (96), Expect = 2e-12 Identities = 115/157 (73%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| |||||| |||| || || || ||||| | || |||||| | || Sbjct 158889 ATGCAAATCTTCGTCAAGACTTTGACTGGAAAGACCATCACTTTGGAAGTTGAATCCTCT 158948 Query 31253 GACAGTGTCGA-AACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | | || |||| | | | ||| | ||| |||||||| | || |||||||| Sbjct 158949 GATACCATTGAGAACGTTAAGGCCAAGA-TCCAGGATAAGGAAGGAATTCCACCCGACCA 159007 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348 ||| ||| | || || ||||| || |||||||||||| Sbjct 159008 GCAACGTTTGATCTTTGCTGGAAAGCAGTTGGAAGAC 159044 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| |||||| |||| || || || |||||| |||| |||||| | || Sbjct 158354 ATGCAGATTTTCGTCAAGACTTTGACTGGAAAGACTATCACCCTCGAGGTTGAATCCTCT 158413 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | || | || || | || |||||||||||| | || || |||||| Sbjct 158414 GATACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGAATTCCACCAGACCAG 158473 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 |||||||| || || ||||| || || | ||||| Sbjct 158474 CAGCGTCTCATCTTTGCTGGAAAGCAACTTGAAGA 158508 Score = 82.4 bits (90), Expect = 7e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 31194 TGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCG 31253 ||||||| |||||||| || || || || || || |||||| |||| || || | || | Sbjct 39561 TGCAAATCTTCGTAAAAACCCTCACCGGAAAGACAATCACCCTCGAGGTCGAGTCCTCTG 39502 Query 31254 ACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGC 31313 ||| |||| | ||||| | || |||||||| || | || || ||||||| Sbjct 39501 ACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGTATTCCACCTGACCAGC 39442 Query 31314 AGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348 ||||||| || || ||||| || ||| | |||||| Sbjct 39441 AGCGTCTCATCTTTGCTGGAAAGCAGCTCGAAGAC 39407 >seq30 Length=118212 Score = 104 bits (114), Expect = 2e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 31194 TGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCG 31253 ||||||| || || ||||| || || ||||| || |||||| |||| || || | || | Sbjct 47150 TGCAAATCTTTGTTAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCTCTG 47209 Query 31254 ACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGC 31313 ||| | |||| | ||||| || ||| |||||||||||| | || || ||||||| Sbjct 47210 ACACTATCGAGAATGTCAAGGCGAAAATCCAGGACAAGGAAGGAATCCCACCAGACCAGC 47269 Query 31314 AGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348 ||||||| || || ||||| || ||| | |||||| Sbjct 47270 AGCGTCTCATCTTTGCTGGAAAGCAGCTCGAAGAC 47304 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| ||||| || || || || || || || | || || || | ||| Sbjct 47618 ATGCAAATCTTCGTCAAGACCCTCACTGGAAAGACCATTACTTTGGAAGTCGAGTCATCC 47677 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | | |||| ||||| | || ||| |||||||| | || || |||||| Sbjct 47678 GACACTATTGAAAACGTCAAGGCCAAGATCCAGGATAAGGAAGGAATCCCACCAGACCAG 47737 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||| | || ||||| || || ||||||||||| || | || || ||| Sbjct 47738 CAGCGTTTGATTTTCGCCGGAAAGCAGTTGGAAGATGGCCGCACCCTCTCTGACTACAAC 47797 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 |||||||| || || |||||||| |||| ||| | || | || |||| Sbjct 47798 ATTCAAAAGGAGTCTACTCTTCACTTGGTCCTTCGTCTTCGTGGTGGTA 47846 Score = 82.4 bits (90), Expect = 7e-11 Identities = 114/157 (73%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || |||||| |||| || || || ||||| | || |||||| | || Sbjct 48381 ATGCAAATCTTTGTCAAGACTTTGACTGGAAAGACTATCACTTTGGAAGTTGAATCCTCT 48440 Query 31253 GACAGTGTCGA-AACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | | || |||| | | | ||| | ||| |||||||| | || |||||||| Sbjct 48441 GATACCATTGAGAACGTTAAGGCCAAGA-TCCAGGATAAGGAAGGAATTCCACCCGACCA 48499 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348 ||| ||| | || || ||||| || |||||||||||| Sbjct 48500 GCAACGTTTGATCTTTGCTGGAAAGCAGTTGGAAGAC 48536 >seq2 Length=712398 Score = 102 bits (112), Expect = 7e-17 Identities = 118/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 ||||||||||||||||| ||||| || || || || || |||||| |||| ||||| | Sbjct 184899 AACATGCAAATTTTCGTCAAGACCCTTACGGGAAAGACCATCACCCTCGAGGTTGAGTCT 184840 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 ||||||| |||| | ||||| | || ||||||||| || | || || ||| Sbjct 184839 TCCGACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCACCTGAC 184780 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348 ||||||||||| || ||||| || || ||| | || ||| Sbjct 184779 CAGCAGCGTCTCATCTTCGCCGGAAAGCAGCTCGAGGAC 184741 >seq90 Length=625778 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| || || || || || |||||| |||| || || | ||| Sbjct 499206 ATGCAGATCTTCGTCAAGACCCTCACGGGTAAGACCATCACCCTCGAGGTGGAGTCTTCC 499265 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||||| ||||| | || ||||||||| || | || || |||||| Sbjct 499266 GACACTATCGAAAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCACCTGACCAG 499325 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348 |||||||| || || || || || ||| | || ||| Sbjct 499326 CAGCGTCTCATCTTTGCCGGAAAGCAGCTCGAGGAC 499361 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445763965001040