Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizoclosmatium_20globosum_20[genbank_20GCA_5F002104985.1_202017-04- 20] 437 sequences; 57,018,351 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq157 152 6e-32 >seq157 Length=558770 Score = 152 bits (168), Expect = 6e-32 Identities = 350/520 (67%), Gaps = 18/520 (3%) Strand=Plus/Plus Query 33290 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATT 33349 ||| |||||||| ||||| || || || || || || ||||||| ||| || || Sbjct 322277 TTTCTGGTATTCTCCCACTTTCTTCTCAAAGAAGTTGGTCTTTCCTTGCAAGGAGATGAG 322336 Query 33350 TTCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAAT 33409 |||||||| ||||| || || || ||||| | || | | ||||| ||||| Sbjct 322337 ATCCATGAAGTCAAAGGGGTTCTCGACGTTGTAGAGCTTAGGACAGCCCAA---AGAAAC 322393 Query 33410 CAA---TCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTAT 33466 ||| ||| |||||||||||||| || || |||||| ||| | |||||||| || Sbjct 322394 CAAAAGTCTGTCTGCGACGAATTCAATGTACTGGCTCATCAAGTCAGAGTTCATTCCAAT 322453 Query 33467 GAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTAT 33526 ||||| || || || || || | | ||||||||| |||| || || | | | Sbjct 322454 CAGTTTCACAGGGAGGGCGTCAATCAAAAATTCTTGCTCAAGCTCGACAGCTTCAGAGAC 322513 Query 33527 AATAAATCTAACGGTTTCTTCACTCGGTGGATGTAAT----AAATGTTTAAACATCAAAC 33582 ||| | || || || ||| | ||| | || | || |||||| | || Sbjct 322514 AATCT-TGTAGACGTATCG--ACT-GTTGGCT-TATTCTTCAACAAGCTAAACAAAAGAC 322568 Query 33583 ATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTC 33642 | || || || ||| || ||||||||||| ||| | || ||||| || || || | Sbjct 322569 AAGCAAAGTCAGTGTGGAGGCCCTCGTCTCTGGAAATGAGCTCATTAGAGAATGTAAGGC 322628 Query 33643 CGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGA 33702 | ||||| | ||||||||| || ||||| || |||||||| || || || || ||||| | Sbjct 322629 CTGGCATCAAGCCACGCTTCTTGAGCCAGAAGATGGAAGCAAAGGAACCAGAGAAGAAAA 322688 Query 33703 TTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCG---GCGCTGTCATGTA 33759 |||| || || | || || |||| ||| | ||| | | | | ||||| | Sbjct 322689 TTCCCTCCACGACGGCGAAAGCAACAAGCCGTTCTGCGAAGGAGGAAGACTTGTCAGAGA 322748 Query 33760 TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGG 33799 ||||||| |||||||||||||||||||| | | ||| || Sbjct 322749 TCCACTTGAGAGCCCAATCGGCCTTCTTTCTAATACATGG 322788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629814159621360